| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1810 |
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| Symbol | |
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| ID | 4258395 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | - |
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| Start bp | 2131033 |
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| End bp | 2134515 |
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| Gene Length | 3483 bp |
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| Protein Length | 1160 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638122468 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_737859 |
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| Protein GI | 114047309 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.540051 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACAAA TTTCAGCCCT AACACCGCCC GTTGTCAAAA ATGGAACTCA AATGCAAACC
CTGTCGTGTC TCGCTGGGGT TGGTCAAGCC GTTACCCTCG CCAGCCTAGT TCGCCAACAC
AAGGGCACAA CACTGATTGT GACCAGTGAT ACACCGACGG CATTGAGTAT CGAGTTAGAG
CTCAACTATT TGTTGGCTAA AAGTGCGATT AAGGTGCGAC TGTTTCCTGA CCGTGAAACC
CTGCCCTACG ACAGTTTTTC GCCCCATCAG GATTTGATTT CCCAGCGTTT AGAAACCCTG
TCGCAAATCA CCCAAGCCGA GCACAGCGTA GTGATAGTGC CGGTGACAAC GCTGATGATG
CGCCTGCCAC CGAAATCCTA TTTAAGCTCC AATGTGTTTG TGCTTAAAAA AGGCGATAAA
TATCAGCTCC ATGATGTGCG CCAACAGTTA ACCGACACGG GTTATCACTT GGTGGAACAG
GTTTACGAAC ATGGCGAGTT TGCTATTCGT GGCTCGATTC TCGATATCTT CCCTACTGGC
GTGAATATGC CGCTGCGTAT CGAACTGTTC GATGATGAAG TCGAGACCAT TCGTCATTTC
GATCCTGAAA CCCAGCGCTC ATCCACTCCA GTCGATGCGG TGCGCCTATT ACCTGCCAAG
GAATTCCCTA CCGACAGCAG CGCCATCGAA GGTTTTAGGC AGCGTTATCG CCGCCGTTTT
GAGGTCATAG TCAAAGAGCC AGAATCAGTT TATCAACTGG TGAGCCGCAA TTTGATGCCC
GCGGGCATTG AAAACTATCT GCCACTGTTT TTCGATGAAG TCGCGACACT GTTCGATTAT
CTGCCGAAGG ACACTCAGTT AGTCACCCTA GGCGATATCG AAAAGTCCGC CCGCGCTCAT
TTGCAAGAGG TAGAAACCCG CTATGAAGAC AGACGGGTCG ACCCATTGCG GCCGCTGTTG
GCACCAAAAG AGCTGTATTT ACTGATAGAA GAATTATTTG CCGCCTTTAA GCCGCTGCCT
CGCTATCAGT TTATTGCGCC GCAACCCGAT GTCGTCGCTG GCGCAGTACA GATTGATGCC
AGTGTGTTGC CCGAGGTAAG CGCTAATCAC AAGTTAAAGC AGCCACTGAT TGCGCTGCAA
GATTACGCCG AACATGCGCC GCGGATGTTG TTTAGTGCCG AATCGGAAGG CCGCCGCGAA
GCCTTGCTCG AACTCTTAAG TAAAATTCAG TTAAAACCGG CGTTATTCGG CCATTTTGAT
GAATTTATTC AAAGTGATGC CAAACTTGGC CTAATTGTAT CTCCCCTCTC CCGTGGTTGT
TTACTCGGGC TAGGAAAGCA AACCGCCGTC AGCATCATCT GCGAAACCGA ACTCTTTGGT
CATCGCATCT CCCAGCAGCG CCGCCGCGAA AAACAACGCC AGATCAGCAA CGATACTCTG
ATCAAAAACT TAGCCGAGCT CAAAGTCGGC CAGCCAATTG TGCACTTAGA GCACGGTGTG
GCGCTGTATC AAGGCTTAGT TACCCTAGAT ACCGGCGGAA TAGTAGCCGA ATACCTACAG
CTGGAATACT CGGGCGGCGA TAAACTCTAT GTGCCCGTGT CTAACCTGCA CATGATCAGC
CGCTACAGCG TCGGCGCCGA TGGCGATGCG CACCTCAATA AACTCGGTAA CGACACTTGG
GCCAAGGCAA AGAACAAAGC GATCGAGAAA ATCCGCGATG TGGCCGCCGA ACTGCTCGAT
GTCTACGCTC GCCGTCAAGC ACGCCCAGGT GAGAGCTGCG ACATCAACGA TGAAGAGTAT
GCGCAATTTG CCCAAGGTTT CCCCTTTGAA GAAACCGTCG ATCAGGAAAG CGCGATTCAT
GCCGTACTTG CCGATATGCA ATCCCCCGTC GCCATGGACC GCCTCGTTTG CGGTGACGTG
GGCTTTGGTA AGACTGAAGT CGCGATGCGC GCCGCCTTTG TGGCAGTAAA TGCGGGTAAA
CAAGTAGTTG TGCTAGTGCC CACCACGCTA CTCGCCCAGC AGCACTACGA AAACTTTAAA
GACAGATTTG CCGACTGGCC CGTCGTGATT GAGGTGATGT CCCGCTTTAG AACCGCCAAA
GAGCAGACCC AAGTGCTGAA GCAGCTCGAA GAAGGAAAGG TCGATATCGT CATTGGCACC
CATAAGCTGC TGCAATCCGA GGCAAAATTT GAAAACTTAG GCCTGCTAAT CATCGATGAA
GAACACAGAT TCGGCGTAAG ACAAAAAGAG AAAATCAAGG CGCTACGCGC CAACGTGGAT
ATTTTAACCC TCACAGCCAC TCCGATCCCC CGCACCTTAA ACATGGCGAT GTCGGGGATG
CGCGACTTAT CGATTATTGC GACTCCTCCC GCTAAACGCT TGGCGGTGAA GACCTTTGTG
CGCGAATCCG ATCCCGCCAC CGTGCGTGAG GCCATACTGC GTGAAATTCT CCGTGGTGGC
CAAGTGTATT ATTTGCACAA CAATGTCGAA ACCATTGAGA AATGCGCCCA AGATATTAGT
ACCCTGCTAC CCGAAGCGCG GGTGGTGGTG GCCCATGGCC AAATGCGTGA ACGGGATCTT
GAGCGGGTGA TGTCGGACTT TTATCACCAA AGATTCAATG TGTTAGTCTG TACCACTATT
ATCGAAACCG GTATCGACGT TCCGAGTGCG AATACGATTA TTATCGAACG TGCTGACACC
TTCGGCTTAG CCCAGTTGCA CCAACTGCGT GGCCGCGTCG GTCGCTCTCA CCATCAAGCC
TATGCGTATT TGATGACGCC GCATCCTAAA CGCATGACCA GCGATGCCCG CAAACGCCTC
GAAGCCATCG ATGCCCTCGA GGATTTAGGC GCAGGCTTTA TGCTCGCTAC CCAAGACTTA
GAAATTCGTG GCGCGGGTGA GCTCTTAGGC GATGAGCAGA GCGGTCATAT TTCTAAAATT
GGCTTTAGTC TCTACATGGA AATGTTGGAA TCGGCGGTCA AGGCGCTCAA ACAGGGTAAA
GAGCCATCGC TGGCGCAAAT GCTCAATCAG CAATGTGAGA TGGAGCTAAG GATCCCTGCG
TTATTGCCGG AAGACTATGT GAGTGATGTG AATATTCGTC TGTCACTCTA TAAGCGCATC
GCCAGTTGTG ACAGTGAAGA AGCCTTAGAT GAACTCAAGG TTGAGCTTAT CGACCGCTTC
GGTCTGCTGC CCGAGGCCAC CAAAAACCTG ATGGAAATGA CTTTATATAA ACATCAGGCA
ACTCGGCTGG GCGCGACTAA AATTGAGGTA CATGCCAAGG GTGGCAGCAT CGAATTTAGT
GATGATCATG TGATTGATCC CGGCTTTATC ATCGGATTAC TGCAAAGTCA GCCACAAATC
TATCGAATGG ATGGGCCGAA TAAGTTAAAG TTCATCCTCA ATGCCGAAAC GGCAAAAGAT
AGGCTCGCTT TGGTCAAACT CTTGCTCGAA CAACTATCGC AACATCGTCT TGGAGATAAA
TAG
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| Protein sequence | MTQISALTPP VVKNGTQMQT LSCLAGVGQA VTLASLVRQH KGTTLIVTSD TPTALSIELE
LNYLLAKSAI KVRLFPDRET LPYDSFSPHQ DLISQRLETL SQITQAEHSV VIVPVTTLMM
RLPPKSYLSS NVFVLKKGDK YQLHDVRQQL TDTGYHLVEQ VYEHGEFAIR GSILDIFPTG
VNMPLRIELF DDEVETIRHF DPETQRSSTP VDAVRLLPAK EFPTDSSAIE GFRQRYRRRF
EVIVKEPESV YQLVSRNLMP AGIENYLPLF FDEVATLFDY LPKDTQLVTL GDIEKSARAH
LQEVETRYED RRVDPLRPLL APKELYLLIE ELFAAFKPLP RYQFIAPQPD VVAGAVQIDA
SVLPEVSANH KLKQPLIALQ DYAEHAPRML FSAESEGRRE ALLELLSKIQ LKPALFGHFD
EFIQSDAKLG LIVSPLSRGC LLGLGKQTAV SIICETELFG HRISQQRRRE KQRQISNDTL
IKNLAELKVG QPIVHLEHGV ALYQGLVTLD TGGIVAEYLQ LEYSGGDKLY VPVSNLHMIS
RYSVGADGDA HLNKLGNDTW AKAKNKAIEK IRDVAAELLD VYARRQARPG ESCDINDEEY
AQFAQGFPFE ETVDQESAIH AVLADMQSPV AMDRLVCGDV GFGKTEVAMR AAFVAVNAGK
QVVVLVPTTL LAQQHYENFK DRFADWPVVI EVMSRFRTAK EQTQVLKQLE EGKVDIVIGT
HKLLQSEAKF ENLGLLIIDE EHRFGVRQKE KIKALRANVD ILTLTATPIP RTLNMAMSGM
RDLSIIATPP AKRLAVKTFV RESDPATVRE AILREILRGG QVYYLHNNVE TIEKCAQDIS
TLLPEARVVV AHGQMRERDL ERVMSDFYHQ RFNVLVCTTI IETGIDVPSA NTIIIERADT
FGLAQLHQLR GRVGRSHHQA YAYLMTPHPK RMTSDARKRL EAIDALEDLG AGFMLATQDL
EIRGAGELLG DEQSGHISKI GFSLYMEMLE SAVKALKQGK EPSLAQMLNQ QCEMELRIPA
LLPEDYVSDV NIRLSLYKRI ASCDSEEALD ELKVELIDRF GLLPEATKNL MEMTLYKHQA
TRLGATKIEV HAKGGSIEFS DDHVIDPGFI IGLLQSQPQI YRMDGPNKLK FILNAETAKD
RLALVKLLLE QLSQHRLGDK
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