Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_1804 |
Symbol | |
ID | 4258389 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 2125652 |
End bp | 2127028 |
Gene Length | 1377 bp |
Protein Length | 458 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638122462 |
Product | L-serine ammonia-lyase |
Protein accession | YP_737853 |
Protein GI | 114047303 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1760] L-serine deaminase |
TIGRFAM ID | [TIGR00720] L-serine dehydratase, iron-sulfur-dependent, single chain form |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.731285 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTAGCG TATTCGATAT GTTCAAGATC GGCATTGGCC CTTCGAGTTC ACACACTGTT GGCCCCATGA AAGCGGGCAA AATTTTTATG CAGCACCTTG CTGACTCGGG CAAAATTGCC CAAGTAGATG AATTACGAGC CGAACTGTTT GGTTCCCTCG GCCAAACGGG TAAAGGTCAC GGCACGGGTA AAGCGGTAAT TTTAGGCTTA ATGGGTGAAG ATCCAGAAAC CGTCGACACC GACAGCATCG ATGGCATTCT TGAGCAAGTT TCTAAAAACG AGACCCTCAC CCTCAGCTGC GGCAAAGTAG TCAAGTTTAC CCGTGAAGAC GGCATTACCT ACCACAGACG CAAAACGCTA CCCGCCCATG CCAACGCCAT GACACTGTAT GCCTACAGCA AAGGCGAATG TATTTTTGAG CGCACTTACT ATTCAGTCGG CGGCGGATTT ATCTTAGACG AAGATGAAAT CAATCAGCGC AATGCCTCAC CAGCATCACA AATTGAATCA GCACCTTACG ATTTTAATAG CAGTGCTCAA TTACTGGATT TATGTACTGA GCATGGCTTA AGCATTTCTT CCCTGATGAT GGCCAACGAG CTTAGCCTCG CCAGCGAAGA AGAAGTCAAA GCTAAACTGT GGAATATCTG GCAAACCATG AAAACCTGTA TCGAACGGGG TTATCAGAAG GAAGGTATTC TGCCTGGCGG TTTAAAGCTG CGCCGCCGCG CACCTGCACT CTATCGTCGT CTCAAAGCCG AAGGCCGTAA CAACGTCGAT CCATTAACCG CAATGGATTG GGTCGATTTA TTCGCCCTGT CGGTGAACGA GCAAAACGCT GCCGGCGATC GCGTTGTCAC CGCACCAACA AACGGCGCCG CGGGCATTAT CCCTGCCGTG CTGTGCTACT ACGATACCTT CGTGCAAGAA GTCGATATCG ATGTTTGCGC CCGTTACCTG TTAACCGCTG CTGCGATTGG TATTTTGTAC AAGAAAAATG CCTCGATTTC GGGCGCTGAA GTTGGCTGTC AGGGCGAAGT TGGTGTAGCC TGCTCAATGG CAGCTGGCGC ATTGACCGAG ATCATGGGCG GCACAGTCGA ACATGTTGAA AACGCGGCCG AAATTGGCAT GGAACATAAT CTAGGCCTGA CCTGCGACCC CGTAGGCGGC CTAGTACAAG TTCCTTGTAT TGAACGCAAT GCGATGGGTG CAATCAAGGC CATTAACGCA TCACGCATGG CGCTGCGCGG CGACGGCAAC CACAAGGTAT CACTGGATAA AGTGATTAAA ACCATGATGG ATACAGGTAA AGATATGCGC AGTAAATACA AAGAAACCGC CAAAGGCGGC CTCGCTGTGA ACATTGTAGA GTGTTAA
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Protein sequence | MISVFDMFKI GIGPSSSHTV GPMKAGKIFM QHLADSGKIA QVDELRAELF GSLGQTGKGH GTGKAVILGL MGEDPETVDT DSIDGILEQV SKNETLTLSC GKVVKFTRED GITYHRRKTL PAHANAMTLY AYSKGECIFE RTYYSVGGGF ILDEDEINQR NASPASQIES APYDFNSSAQ LLDLCTEHGL SISSLMMANE LSLASEEEVK AKLWNIWQTM KTCIERGYQK EGILPGGLKL RRRAPALYRR LKAEGRNNVD PLTAMDWVDL FALSVNEQNA AGDRVVTAPT NGAAGIIPAV LCYYDTFVQE VDIDVCARYL LTAAAIGILY KKNASISGAE VGCQGEVGVA CSMAAGALTE IMGGTVEHVE NAAEIGMEHN LGLTCDPVGG LVQVPCIERN AMGAIKAINA SRMALRGDGN HKVSLDKVIK TMMDTGKDMR SKYKETAKGG LAVNIVEC
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