Gene Shewmr7_1787 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_1787 
Symbol 
ID4258511 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp2108324 
End bp2111359 
Gene Length3036 bp 
Protein Length1011 aa 
Translation table11 
GC content44% 
IMG OID638122446 
Producttype III restriction enzyme, res subunit 
Protein accessionYP_737837 
Protein GI114047287 
COG category[V] Defense mechanisms 
COG ID[COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 
TIGRFAM ID[TIGR00348] type I site-specific deoxyribonuclease, HsdR family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.990163 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.226288 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTCAGTA GTACTAACGA GCAGGCGTTA GAGGCTAGTA TTGAAAGAGC CCTCACAGGT 
CATTGCCTTG AAGATCAAAA AGCAGGCATT TCTGATGGGA TTGTTACGCC ATATGGTGTG
AACCATTGCG GCTACTCATC AGGCTACTCA TCAGATTTCA ATATGCAATA TGCCATTGAT
GAACGTTTCT TCTGGCAATT TCTGCAAAAG ACACAAGAAG TAGAGCTGGC CAAACTGCAA
AAGAACAATC CCTCAGATTG GCAGCGTAAG TTACTCGAAC GATTTGACCG ATTGATTAAG
AAGCATGGCA TTCTTCATTT ACTTAAGAAA GGGCTAAGCG TAGACGATGC TCATTTCAAT
TTGCTCTATC CAGCCCCTCT GGCAAGCAGT AGTGAGAAGG TAAAGCAAAA CTTTGCAGAC
AATGTGTTTA GTTGTACTCG CCAAGTGCGC TATTCCATGG CAAATCCCCT ACAAGAAATC
GACATGGTAT TGTTTATCAA CGGAATACCA TTGATAACGC TGGAGTTGAA GAACGCATGG
ACGGGGCAAA CAGCACGTTA TCACGGCCAA AAGCAGTATC GAGATGACCG AGATGCAACT
CAGCCATTGC TGACCTTTGG CCGCTGCCTA GTGCATATGG CGGTCGATAC CGACGAAGTG
TATATGACTA CCAAGTTATC AGGTGGCAGT ACTTTCTTCT TGCCGTTCAA TAAAGGACAC
AATCTTGGAC AGGGTAATCC ACCTAACCCA ACTGGCCATA AAACGGCATA CCTATGGCAA
GAAGTATTCA CTAAAGAAAG CTTGGCGAAT ATTATTCAGC ATTTTGTGCG TCTGGATGGG
TCAAGCAAAG ATCCATTACC AAAGCGAACC TTATTCTTTC CTCGATACCA CCAATTGGAT
GTGGTGAGAA AATTAGTAGA CCATGCTGCC CAGCACGGTG TCGGTCAGAC TTACTTAATT
CAACACTCTG CCGGTTCAGG TAAGTCTAAT TCGATTACTT GGGCTGCTTA TCAGTTAATT
GAAACCTATC CTGCTTCGTC TGATGTGGCC GGTGGAAAAA GCCTGGAGCA GCCGTTGTTT
GACTCTGTAA TTGTGGTTAC CGATAGACGC TTATTGGACA AGCAGCTGCG GGATAACATT
AAAGAGTTTT CTGAAGTAAA GAACATTATT GCCCCGGCGA ACAAGTCTTC TGAGCTTAAG
CAAGCGCTGG AGAATGGCAA AAAGATCATT ATAACGACGA TTCAGAAATT CCCGTTCATT
ATTGATGGTA TCGCCGATCT TAGTGACAAG CGCTTTGCGG TGATTATCGA TGAAGCACAC
AGCTCACAGT CTGGTTCGGC GCATGACAAT ATGAACCGAG CGATGGGTAA GTCTGAAGTC
GAAGAGGCAG AAGATGCTCA GGATAAAATC CTTCAGGCGA TGAAATCGCG CAAGATGCGC
GGGAATGCGT CGTACCTGGC ATTTACAGCG ACACCAAAAA ACAGCACTTT GGAGAAATTT
GGTCAACGCC AAGAAGATGG CCCTTTCAAG CCGTTTCACT TGTATTCGAT GAAACAAGCC
ATTGAGGAAG GCTTCATCTT AGATGTGCTG GCAAATTATA CGACGTACAA AAGTTATTAT
GAGATTGAGA AATCAATCGC TGATAACCCT GAGTTTGATA CCAAAAAGGC GCAGAAAAAA
CTCAGAGCTT ATGTAGAGCG AAGCCAGCAA ACGATTGATA CCAAGGCAGA AATTATGCTG
GAGCATTTTG TTCCACATGT CGTGAATGCG AAAAAGCTCA AAGGTAAAGG TAAGGCAATG
GTGGTCACTC AAAATATTGA GACGGCCATT CGATACTACA AAGCGATTAA GCGGATACTT
GAGGAGCAAG GAAACCCGTT TAAAGTTGCC ATTGCTTTCT CAGGAACCAA AGAAGTTGAC
GGTATTGAAT ATACCGAAGC AGATATTAAT GGTTTTGCCG AGTCAGATAC CAAAGATATG
TTTGATACCG ATGAGTATCG ACTTTTAGTG GTTGCTAACA AGTATCTGAC TGGGTTTGAC
CAGCCTAAGC TTTGCGCCAT GTATGTGGAC AAGAAGCTCG CCAGTGTCTT GTGTGTACAG
ACATTGTCTC GTCTCAATCG AAGTGCGCCA AAATGGGGTA AAAAAACAGA AGACCTGTTT
GTTTTAGACT TTTTCAACTC GGTTGAAGAT ATTCAGTCAG CATTCGATCC TTTCTACACA
GCAACGTCAT TGTCGCAGGC TACAGATATA AACGTGCTGC ACGAGTTGAA GGATGAAATG
GACGATGTCG GTGTGTACGA GTGGTATGAA GTTGAAGACT TTGTGACGCG TTATTTCAAG
AATGAAGACG CCCAGACACT CAGTCCAATC ATTGATGTTG CAGCAGCACG GTTTGACCAT
GAGCTGGAGC TTGAAGCTGA AGCTAAAGTG GACTTTAAGA TTAAAGCCAA GCAGTTCGTG
AAAATCTATG GGCAGATGGC GTCTATCATG CCTTATGAAA TGGTCAGCTG GGAAAAACTG
TTTTGGTTCA TGAAGTTTTT AATACCGAAA TTGAAAGTGG AAGATCCCGA TGCAGATGCT
ATTGATGAGC TTCTCGATTC TGTCGATCTG AGTTCATACG GTTTGCAACG TGTGAAGCTT
AACCACAGCA TTAAGCTTAG TGACCAAGAA GCGGAGCTTG ATCCTCAAAA TCCGAACCCA
CGTGGGGCGC ATGGCGGTGA AAAAGAAACT GACCCGCTGG ATGAAATCAT TCGAACATTT
AATGAACGAT GGTTCCAGGG CTGGAGTGCC ACACCTGAAG AGCAAAAGGT TAAGTTCGTG
AACATCGCTG AGAGTATCCG CAATCACCCA GATTTTGAAT CTAAATACAA AAACAACCCA
GATCCTCATA ATCGAGATTT GGCCTTCGAA AAAATGCTCA AGGAAATTAT GCTGCAACGC
CGTAAAGATG AACTTGAGCT CTACAAGTTG TTCGCAGGAG ATTCAGCATT TAAAGCCTCG
TGGACGCAAA GTATGCAACG AATGGTAGGT ATGTAG
 
Protein sequence
MVSSTNEQAL EASIERALTG HCLEDQKAGI SDGIVTPYGV NHCGYSSGYS SDFNMQYAID 
ERFFWQFLQK TQEVELAKLQ KNNPSDWQRK LLERFDRLIK KHGILHLLKK GLSVDDAHFN
LLYPAPLASS SEKVKQNFAD NVFSCTRQVR YSMANPLQEI DMVLFINGIP LITLELKNAW
TGQTARYHGQ KQYRDDRDAT QPLLTFGRCL VHMAVDTDEV YMTTKLSGGS TFFLPFNKGH
NLGQGNPPNP TGHKTAYLWQ EVFTKESLAN IIQHFVRLDG SSKDPLPKRT LFFPRYHQLD
VVRKLVDHAA QHGVGQTYLI QHSAGSGKSN SITWAAYQLI ETYPASSDVA GGKSLEQPLF
DSVIVVTDRR LLDKQLRDNI KEFSEVKNII APANKSSELK QALENGKKII ITTIQKFPFI
IDGIADLSDK RFAVIIDEAH SSQSGSAHDN MNRAMGKSEV EEAEDAQDKI LQAMKSRKMR
GNASYLAFTA TPKNSTLEKF GQRQEDGPFK PFHLYSMKQA IEEGFILDVL ANYTTYKSYY
EIEKSIADNP EFDTKKAQKK LRAYVERSQQ TIDTKAEIML EHFVPHVVNA KKLKGKGKAM
VVTQNIETAI RYYKAIKRIL EEQGNPFKVA IAFSGTKEVD GIEYTEADIN GFAESDTKDM
FDTDEYRLLV VANKYLTGFD QPKLCAMYVD KKLASVLCVQ TLSRLNRSAP KWGKKTEDLF
VLDFFNSVED IQSAFDPFYT ATSLSQATDI NVLHELKDEM DDVGVYEWYE VEDFVTRYFK
NEDAQTLSPI IDVAAARFDH ELELEAEAKV DFKIKAKQFV KIYGQMASIM PYEMVSWEKL
FWFMKFLIPK LKVEDPDADA IDELLDSVDL SSYGLQRVKL NHSIKLSDQE AELDPQNPNP
RGAHGGEKET DPLDEIIRTF NERWFQGWSA TPEEQKVKFV NIAESIRNHP DFESKYKNNP
DPHNRDLAFE KMLKEIMLQR RKDELELYKL FAGDSAFKAS WTQSMQRMVG M