| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1740 |
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| Symbol | yebU |
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| ID | 4257697 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | - |
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| Start bp | 2045744 |
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| End bp | 2047276 |
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| Gene Length | 1533 bp |
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| Protein Length | 510 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638122398 |
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| Product | rRNA (cytosine-C(5)-)-methyltransferase RsmF |
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| Protein accession | YP_737790 |
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| Protein GI | 114047240 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
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| TIGRFAM ID | [TIGR00446] NOL1/NOP2/sun family putative RNA methylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAAAAG CCAAGGGAGA AAATCCCAGC CCAGTAAGGG ATTATGATAT ACTTGCCGCA
GTTGATACAC AGCCTAATCC CGTTATGGTT CAATTAAATC AAAATTTTAT CAATACTATT
GCCCAAGAAC TGCCCGCCCA TCTCTCAATG GATGACTTTA TCGCGGCCTG TTCAAGGCCA
CTACGCCGCT CGATTCGCGT CAACACCTTA AAGATCAGCA GTGAAGACTT TAAGCAGTTA
ATGCTGCCCA AAGGATGGAC CTTTGAACCC ATTCCCTGGT GTGAGGATGG TTTCTGGATA
AGCTACGATG AAGAAGAGCA GCTCGGCAAC GCCCTAGAGC ATATTCAGGG ATTGTTCTAT
ATCCAAGAAG CCAGCTCCAT GTTGCCCCCC ACAGCGCTAT TTACCCCAAA TGCGGATTGG
CAATGTGTAT TAGATTTAGC CTCTGCGCCC GGCTCTAAAA CCACGCAAAT GGCAGCGTTA
ATGAATAATC AAGGCTTATT AGTCGCCAAT GAATATTCCG CTAGCCGCGT CAAAGTACTC
CATGCCAATG TGCTGCGCAT GGGCGCCAGT CACTGCGCCC TGACCCACTT CGATGGACGG
GTATTTGGCG AGTATCTGTA TGAAAGTTTT GATGCGGTAT TGATTGATGC CCCCTGCGGC
GGTGAAGGCA CAGTCCGTAA AGATGCGGAC GCGTTAAAAT CTTGGTCCCT CGATGAGGTG
CTCGAAATTA GCGAAACCCA AAAGGCATTA ATCGAATCCG CCTTTTTGGC GTTAAAACCG
GGTGGCAGTT TGGTGTATTC CACTTGCACC CTGAATCGGC ACGAAAACCA AGGCGTGTGC
GAATATTTAC AGCAAACCTA TGGCGATGCG GTGCAATTTG AATCCTTAAG CCAACTGTTT
GATGGCGCTG AAAAAGCCAC TACGCCAGAA GGCTTTTTGC ACGTTTGGCC GCAAATTTAC
GACAGTGAAG GCTTTTTTGT CGCTAAGTTG ACTAAAACCC GCTCTGTGCC GCGCTTACAA
CCTGAGCCTA AATTGCAAAA GAATTTCCCC TTTACGGAGG CGAGTGCCAA ACAAGCCAAA
GCCATTCAAG CCTATTTTGC CGATGATCTG GGTATCAAAC TGCCCGATGA TCTCATTATG
GTGCGCGACG ATGAGTTTTG GCTCTTTCCC CATGAATTTA GAGATTTTAT TGGCAAAATG
CGCTTTCAGC GGATTGGGGT TAAGCTGGCC GACCACAGCA AACATGGCTT TAAAGTCCGT
CATGAAGCCA TTATTGCGCT TGCGGGAAAA GCACTTACCG CGGGGGCGGC AAACGGCGCT
AAAGTCGTCG ACGTTAGCGA TGAGCAGGCG AAAGAGTATT TAATGGGACG AGATATTCCC
CTCGATACGG CTGGCAAGGC TCAAGGTGAA GTGATTGTCT GTTATGGCGG CGCGCCCTTA
GGCATGGCTA AACATTTAGG CAATAAATTA AAAAACAGCC TGCCCAGAGA CTTAGTAAAA
GATAAAGTGT TATTGCTACC ACCACAGGCA TAA
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| Protein sequence | MAKAKGENPS PVRDYDILAA VDTQPNPVMV QLNQNFINTI AQELPAHLSM DDFIAACSRP
LRRSIRVNTL KISSEDFKQL MLPKGWTFEP IPWCEDGFWI SYDEEEQLGN ALEHIQGLFY
IQEASSMLPP TALFTPNADW QCVLDLASAP GSKTTQMAAL MNNQGLLVAN EYSASRVKVL
HANVLRMGAS HCALTHFDGR VFGEYLYESF DAVLIDAPCG GEGTVRKDAD ALKSWSLDEV
LEISETQKAL IESAFLALKP GGSLVYSTCT LNRHENQGVC EYLQQTYGDA VQFESLSQLF
DGAEKATTPE GFLHVWPQIY DSEGFFVAKL TKTRSVPRLQ PEPKLQKNFP FTEASAKQAK
AIQAYFADDL GIKLPDDLIM VRDDEFWLFP HEFRDFIGKM RFQRIGVKLA DHSKHGFKVR
HEAIIALAGK ALTAGAANGA KVVDVSDEQA KEYLMGRDIP LDTAGKAQGE VIVCYGGAPL
GMAKHLGNKL KNSLPRDLVK DKVLLLPPQA
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