| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1729 |
|---|
| Symbol | |
|---|
| ID | 4257686 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 2035044 |
|---|
| End bp | 2036000 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638122387 |
|---|
| Product | auxin efflux carrier |
|---|
| Protein accession | YP_737779 |
|---|
| Protein GI | 114047229 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0679] Predicted permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000582172 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCAATA TCATTGAGCA GTTGTTGTTT TCTGCTTCAA TAACCGGTCC CATCTGTTTA
ATGTTAGCCT TAGGCGTGAT GCTTAAACGC ACCCAAGTGA TTGATGAGCA CTTTATTGAT
ATCGCCTCTA AGCTGGTTTT TAATGTCACC CTGCCCGCGC TGTTGTTTCT CAGCATCATT
AGCTCGCATC ACGATCTGGC CGCCAGTGCG CCGTTAATCG GTTATGGTTT ATTAGCCAAC
TTACTGTTTT TTATCCTCTC AACCTACGCG ACGAAACGAT TTTTCCCCGA GCCGAAGGAT
CAAGGCGTCA TCATTCAAGG GGGATTTAGA GCCAATACCG CCATTATCGG CTTAGCCTAT
GTCTCTAATG CCTATGGCGA ATCGGGCGTT GCCTTAGCGG CCGTTTATGT GGCTTCCATG
ACGCTGCTCT ACAATATTCA AGCCGTGATT TGTTTAAGCC CGCGGGGAGA AGAATCGAGC
CGCCGCGCCT TTGCGGTGAT CATTAAAACC ATCACCAAAA ACCCGCTGAT CATTGCCATC
ATGCTCGGCA TGCTGTTTTA TCTGCTGGCG ATCCCCGTAC CTAAAATGGT TCTAGATGCC
GGACAATACT TTGCCAATAT GACGCTCCCC TTAGCACTGC TGTGCACCGG CGGCTCACTG
GATATTGGCT CGCTTAGACA TGAAAAGTAT TCCACTTGGT TCTCGACCGC CTTAAAACTG
ATCTTTGCCC CGCTGTTCAT CACCCTGGGG GCCTTGATTC TTGGCTACCG CGGTGTGGAA
CTGGCCTTAG TGTTTTTAAT GAGCGCCGCG CCCACAGCGG CCGCAAGTTA TGTGATGGCG
CGGGCCATGG GGGGAAATGC CACCCTAGCC GCTAATATTA TCGCCCTCAC TACCGTTTGC
TCACTGATCA CCTGCACCTT AGGCATTTTT ATCCTGTCGA CCCTAGGGCT TATTTAA
|
|---|
| Protein sequence | MGNIIEQLLF SASITGPICL MLALGVMLKR TQVIDEHFID IASKLVFNVT LPALLFLSII
SSHHDLAASA PLIGYGLLAN LLFFILSTYA TKRFFPEPKD QGVIIQGGFR ANTAIIGLAY
VSNAYGESGV ALAAVYVASM TLLYNIQAVI CLSPRGEESS RRAFAVIIKT ITKNPLIIAI
MLGMLFYLLA IPVPKMVLDA GQYFANMTLP LALLCTGGSL DIGSLRHEKY STWFSTALKL
IFAPLFITLG ALILGYRGVE LALVFLMSAA PTAAASYVMA RAMGGNATLA ANIIALTTVC
SLITCTLGIF ILSTLGLI
|
|---|
| |