| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1708 |
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| Symbol | sdhA |
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| ID | 4255267 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 2014709 |
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| End bp | 2016475 |
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| Gene Length | 1767 bp |
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| Protein Length | 588 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638122366 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_737758 |
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| Protein GI | 114047208 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.563088 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGTATTC CAGTACGTGA GTTTGATGCT GTAGTGATTG GTGCCGGCGG TGCCGGTATG
CGCGCAGCAT TACAGATTTC TAAAGAAGGT AAGAGCTGTG CGCTTTTATC TAAAGTTTTC
CCAACACGTT CTCATACTGT TTCTGCGCAA GGTGGTATCA CTGTTGCGTT AGGTAACGCC
CATGAAGACC ATTGGGAACA ACACATGTAC GATACCGTAA AAGGTTCCGA CTTTATCGGT
GACCAAGACG CTATCGAATT CATGTGTCAA ACCGGTCCAG AAGCCATTAT TGAACTCGAG
CACATGGGTT TACCTTTCTC TCGTTTCGAT AACGGTAAGA TTTACCAACG TCCTTTCGGT
GGTCAATCTA AAAACTTCGG TGGTGAACAA GCGGCGCGTA CCGCTGCTGC GGCAGACCGT
ACCGGTCACG CACTCCTTCA CTGCTTATAC CAACAGAACG TTAAACACAA AACCCAAGTG
TTTTCTGAAT GGTATGCCCT CGATTTAGTG AAAAACCAAG ACGGTGCCAT CGTAGGTTGT
ACTGCGATTG AAATCGAAAC CGGTGAGATC GTTTACTTCA AAGCCAAAGC CACTGTATTA
GCTACAGGCG GTGCTGGTCG TATCTACGCA TCAACCACAA ACGCACACAT CAATACCGGT
GACGGTGTTG GTATGGCGAT GCGTGCTGGT GTTCAGATGC AAGATATGGA AATGTGGCAA
TTCCACCCAA CCGGTATCGC TGGTGCGGGT GTACTTGTGA CTGAAGGTTG TCGTGGTGAA
GGCGGTTACC TGCTGAACAA AGACGGCGAG CGTTTCATGG AGCGTTATGC ACCAAACGCC
AAGGACTTAG CATCTCGTGA CGTGGTAGCA CGTTCTATGA TGACTGAAAT CCGTGAAGGC
CGTGGTTTAG ATGGTCCATT AGGCCCACAC TGCTTACTGA AACTCGACCA CTTAGGTAAA
GAGACCTTAG AAGCCCGTCT ACCAGGCGTG TGTGAACTTT CTCGTACCTT CGCGCATATC
GATCCGGCCG ATGGTCCAAT CCCAGTTCTG CCAACCTGTC ACTATATGAT GGGTGGTCTG
CCAACGAAGG TGAGCGGTCA AGTTATTCGT AAGAATGACG ACGGCAGCGA GCAAGATGTG
GTTGGTTTAT TCGCAGTAGG TGAGATTGCC TGTGTGTCTG TACACGGTGC TAACCGCTTA
GGCGGTAACT CTCTGCTCGA CTTAGTGGTC TTTGGCCGCG CTGCGGGTCA ACACTTAGGT
AAAGCACTCG ATGAGACTGC GGATCCAAAA GATGCGACCG ATGCGGAAAT TCAAGCGACT
TTAGCACGCT TAAACCGCTG GGAAAGCAAC AAGTCTGGCG AAGATCCAGC GCAAATCCGT
AAAGATTTAC AACTTTGCAT GCAATTAAAC TTCTCTGTAT TCCGCCGTGG CGATGCAATG
GCAGAAGGTT TAGAGCAGTT AAAAGCTATC CGTAAGCGTT TAGAAAATGC CAAGTTGTCT
GATAACTCTC GTGAATTCAA CACTCAACGT ATTGAATGTT TAGAGTTAGA CAACCTGATG
GCGACGGCAA TTGCCACCGC TTATGCTGCT AACTTCCGTA CAGAGAGCCG TGGTGCTCAC
TCACGTGAAG ACTATTTAGA GCGTGATGAT GATAACTGGT TATGTCACAG CCTGTTTGAC
CCTGTGACTG AAACCATGGA CCGTCGTGCT GTGAATATGG CGCCTAAGTT ACGTGAAGCA
TTCCCGCCGA AGAAACGTAC CTACTAG
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| Protein sequence | MSIPVREFDA VVIGAGGAGM RAALQISKEG KSCALLSKVF PTRSHTVSAQ GGITVALGNA
HEDHWEQHMY DTVKGSDFIG DQDAIEFMCQ TGPEAIIELE HMGLPFSRFD NGKIYQRPFG
GQSKNFGGEQ AARTAAAADR TGHALLHCLY QQNVKHKTQV FSEWYALDLV KNQDGAIVGC
TAIEIETGEI VYFKAKATVL ATGGAGRIYA STTNAHINTG DGVGMAMRAG VQMQDMEMWQ
FHPTGIAGAG VLVTEGCRGE GGYLLNKDGE RFMERYAPNA KDLASRDVVA RSMMTEIREG
RGLDGPLGPH CLLKLDHLGK ETLEARLPGV CELSRTFAHI DPADGPIPVL PTCHYMMGGL
PTKVSGQVIR KNDDGSEQDV VGLFAVGEIA CVSVHGANRL GGNSLLDLVV FGRAAGQHLG
KALDETADPK DATDAEIQAT LARLNRWESN KSGEDPAQIR KDLQLCMQLN FSVFRRGDAM
AEGLEQLKAI RKRLENAKLS DNSREFNTQR IECLELDNLM ATAIATAYAA NFRTESRGAH
SREDYLERDD DNWLCHSLFD PVTETMDRRA VNMAPKLREA FPPKKRTY
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