Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_1704 |
Symbol | |
ID | 4255263 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 2010834 |
End bp | 2011910 |
Gene Length | 1077 bp |
Protein Length | 358 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638122362 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_737754 |
Protein GI | 114047204 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.271919 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAAAGT CAAAAATTGC TAAGTTCGCC CTACCCGTGC TGTTAGTGTC AATGTTAGCG GCATGCGGCG AAGAGGAAGT GGCTAAAAAA GAAGAACAAT ATGCCATCCC CGTCGAAACC ACTACCGTAC TGCAGGGTAA TGTGTCTTCG TTTTATAGCA CTACGGCGAC CCTCGAAGCT CCGCAGGAAG CCAACGTCGT TAGCCGCATT GCCGGCCTTA TCGAAGCCAT TAATGTCGAA GAAGGTGACC GGGTACAAAA AGGCCAAATC CTTGCGGTTA TCGATGCTAA ACGTCAGCAA TACGATCTCG ACCGCTCCGA AGCCGAAGTG AAAATCATCG AGCAAGAGTT AAACCGCTTA AAGAAAATGA GCAACAAAGA GTTTATCAGT GCCGACTCGA TGGCCAAGCT TGAGTACAAC CTACAGGCCG CTATCGCCAA ACGCGATCTT GCCGAACTAC AAGTCAAAGA AAGTCATGTG GTCTCCCCCA TCAATGGCAT TATCGCTAAG CGTTATGTGA AGGCCGGTAA TATGGCGAAG GAGTTTGGTG ATCTGTTTTA TATCGTCAAT CAAGACGAGC TGCACGGGAT TGTGCATTTA CCCGAGCAGC AATTAACCAG CCTGCGTTTA GGCCAAGAAG CCCAAGTCTT TAGTAATCAA CAGAGCAAAA ACGCTATCCA CGCGAAAGTA TTGCGGATAA GCCCAGTGGT CGACCCACAG AGCGGCACCT TTAAAGTGAC GTTAGCCGTA CCGAATCAGG ATGCCCATTT AAAGGCCGGT ATGTTCACAA GGGTCGAATT GAAGTATGAC ACCCATGAAA ATGTAATCAC CGTGCCCTAC AGCGCCCTGA TCAATCAAGA CAACAAGCAA GCCCTGTATG TAATTGATGG CACGAGCGCA GACCATCGCG CCAATCGCCG TGAAGTCGAA ATTGGTTACC GTGAAGGCGA TGCGGTGGAA GTGGTCTCCG GTCTAAAACC TGGCGAGCAA GTCGTGACAC GTGGCCAGCA AAATTTGAAA GACCAATCCT TAGTTGAAGT CATTACCCCA CTCGATTTGG CCTCAGCGAA GAACTGA
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Protein sequence | MEKSKIAKFA LPVLLVSMLA ACGEEEVAKK EEQYAIPVET TTVLQGNVSS FYSTTATLEA PQEANVVSRI AGLIEAINVE EGDRVQKGQI LAVIDAKRQQ YDLDRSEAEV KIIEQELNRL KKMSNKEFIS ADSMAKLEYN LQAAIAKRDL AELQVKESHV VSPINGIIAK RYVKAGNMAK EFGDLFYIVN QDELHGIVHL PEQQLTSLRL GQEAQVFSNQ QSKNAIHAKV LRISPVVDPQ SGTFKVTLAV PNQDAHLKAG MFTRVELKYD THENVITVPY SALINQDNKQ ALYVIDGTSA DHRANRREVE IGYREGDAVE VVSGLKPGEQ VVTRGQQNLK DQSLVEVITP LDLASAKN
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