| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1678 |
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| Symbol | mnmA |
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| ID | 4256312 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | - |
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| Start bp | 1979338 |
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| End bp | 1980456 |
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| Gene Length | 1119 bp |
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| Protein Length | 372 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638122337 |
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| Product | tRNA-specific 2-thiouridylase MnmA |
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| Protein accession | YP_737729 |
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| Protein GI | 114047179 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain |
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| TIGRFAM ID | [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00625352 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.128723 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACATCAA TCGAACCCAC TCATACAGGA AAAAAAGTCA TTGTCGGCAT GTCCGGCGGT
GTTGATTCAT CTGTTTCAGC CTATTTGCTT ATGCAGCAAG GCTATCAGGT TGAAGGCCTT
TTCATGAAGA ACTGGGAAGA AGATGACAAC GATGAGTATT GCGCGGCCGC CGAAGATTTA
AAGGATGCTC AAGCCGTATG CGACAAGCTT GGGATCAAAC TGCACACGGT CAACTTTGCC
GCCGAATATT GGGACAATGT GTTCGAGTAC TTCCTCGCCG AATACAAGGC GGGTCGTACC
CCTAACCCCG ATATCATGTG CAACAAAGAA ATCAAATTTA AAGCCTTTTT AGACTTTGCC
GACGATATCC TCGATGCCGA CTACATCGCC ATGGGCCACT ATGTGCGCCG CCGCGATAAT
GCCGATGGCA CCACGCAAAT GCTGCGCGGA GTTGATAACA ATAAGGATCA AAGCTACTTC
CTGTATACCT TAAGCCATGA ACAAGTGGCG CGCAGCCTGT TCCCCGTTGG TGAACTCGAA
AAGCACGAAG TGCGTGAAAT CGCAAAAAAA ATGGGCTTAA TTACCCATGA TAAGAAGGAC
AGCACCGGCA TTTGCTTTAT CGGTGAACGT AAATTCACTG AATTCTTAGG CAATTACTTA
CCGGCGCAAC CTGGCAATAT CGAAACCGCC GAAGGCGAAG TCATTGGTAA GCACCAAGGC
TTGATGTACC ACACCTTAGG CCAACGTAAG GGTCTGGGTA TTGGCGGCAT GAAAAACAGC
AATGACGATC CTTGGTACGT GGTGGATAAA GATTTAAAAC GTAATGTCTT AGTCGTTGGC
CAAGGTGGGC ATCACCCGCG TTTGATGTCA AATGGCATGT TCGTCAATCA ATTGCATTGG
GTCGACCGCA AAGGTCCCGT CGAAGGCAGC CAAATCGTGG TGAAAACCCG TTACCGCCAG
CAGGATATCC CCTGCACCCT CACCTATCTT GATGACAATA CTCTCAAGGT GGTGTTTGAC
GAGCCTGTTG CCGCCGTGAC GCCTGGCCAA TCAGCGGTAT TCTACGATGG CGATGTGTGC
CTAGGTGGCG GGATTATCGA TCAACTCATC CGAGGATAA
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| Protein sequence | MTSIEPTHTG KKVIVGMSGG VDSSVSAYLL MQQGYQVEGL FMKNWEEDDN DEYCAAAEDL
KDAQAVCDKL GIKLHTVNFA AEYWDNVFEY FLAEYKAGRT PNPDIMCNKE IKFKAFLDFA
DDILDADYIA MGHYVRRRDN ADGTTQMLRG VDNNKDQSYF LYTLSHEQVA RSLFPVGELE
KHEVREIAKK MGLITHDKKD STGICFIGER KFTEFLGNYL PAQPGNIETA EGEVIGKHQG
LMYHTLGQRK GLGIGGMKNS NDDPWYVVDK DLKRNVLVVG QGGHHPRLMS NGMFVNQLHW
VDRKGPVEGS QIVVKTRYRQ QDIPCTLTYL DDNTLKVVFD EPVAAVTPGQ SAVFYDGDVC
LGGGIIDQLI RG
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