Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_1660 |
Symbol | |
ID | 4255081 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 1954225 |
End bp | 1956909 |
Gene Length | 2685 bp |
Protein Length | 894 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638122320 |
Product | DNA topoisomerase I |
Protein accession | YP_737712 |
Protein GI | 114047162 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0550] Topoisomerase IA |
TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.367793 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.0000368554 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGGAGCCAA TTTCCACCTT CTTGAGATTT TTTGGCGCAA ATCAAACTAT GGGTAAATCG CTAGTTATTG TCGAATCACC GGCCAAAGCT AAGACCATTA ATAAATATCT TGGCAAAGAA TTCATCGTTA AATCGAGCGT AGGTCACATC CGTGATCTAC CTACATCTTC TTCATCTGAC GGCACTGAAA AGGTGAAATC CGCCGCAGAA GTCAAGAAGA TGTCGCCAGA AGAAAAGGCG CGATACAAAA AGGTGAAAGA ACATCAAGCG CTGGTATCGC GTATGGGCGT TAACCCTGAA AAGGGCTGGG CGGCTAAATA TCAAATCCTA CCGGGTAAAG AGAAAGTTGT TAAAGAGCTA CAAGCTTTAG CCGATTCTGC TGACCAAATT TATCTCGCAA CGGACTTAGA CCGTGAAGGG GAAGCCATTG CCTGGCACTT GCAAGAGGTG ATTGGTGGCG ACTCTTCACG GTATCAGCGC GTGGTGTTTA ACGAGATCAC TAAATCAGCG ATTCAAGAAG CTTTTAGTAA ACCTTCAGCC CTTGACACCA ATATGGTCAA TGCCCAACAG GCACGACGCT TTTTAGATCG CGTTGTCGGC TTTATGGTGT CACCACTATT GTGGAAGAAG GTTGCCCGCG GTTTATCGGC TGGACGGGTA CAATCTGTGG CTGTGCGTCT CGTGGTGGAA CGTGAAAGCG AAATCAAAGC CTTCGTCCCA GAAGAATTTT GGGATGTGCA TGCTCAGCTC AATACGCCTG CTAGCGAAGC GCTGCGCATG GAAGTGGTTA AGTACTTAGA CTCAGCCTTT GAGCCAACAA ATGAGCAGCA AGCATTGGCC GCCGTTCAGG CCTTATCTTC AGCCAGCTTT AAAGTCATTG CCCGCGAAGA TAAAGCCACT CAGAGTAAAC CTTCGGCTCC TTTTATTACC TCCACCTTGC AGCAAGCGGC CAGTACTCGC TTAGGCTTTG GGGTGAAGAA AACCATGATG ATGGCGCAGC GTTTGTACGA AGCGGGTCAC ATCACTTATA TGCGTACCGA CTCCACAAAC CTAAGCCAAG AAGCTTTAGA CAGTGTGCGT GAGATGATTG GCAAGGAATA CGGCGCCAAG TATTTACCTG CCGAACCGAT TCGCTACGGC TCTAAAGAAG GCGCTCAAGA GGCGCACGAA GCGATTCGTC CTTCAAATGT GAACGTCGAA GCCGCAGCTT TAACTGATAT GGAACGTGAT GCGCAGCGCC TTTATGAGTT GATCTGGCGT CAGTTTGTCT CCTGTCAGAT GACACCTGCT CAATACGATG CGACTAAACT CACGGTAAAA GCGGGCGATT ACGAACTGAA AGCGACGGGA CGTATCCTGC GTTTTGACGG TTGGACCCGT GTTCAAACCG CATTGAAAAA GAAAAACGAA GAAGACAATA CACTGCCCTC GGTGAACGAA GGTGATCTGT TGTCTCTGGT CGAATTAGAG CCCAAACAGC ACTTTACCAA GCCGCCCGCC AGATACAGCG AAGCGTCATT GGTGAAAGAG TTAGAGAAGC GTGGCATTGG CCGGCCATCA ACCTATGCCA CCATTATTTC GACGATTCAA GAACGGGGTT ATGTCAAAGT TGAAAACCGC CGTTTCTATG CCGAGAAAAT GGGTGAAATC GTTAGCGAAC GCCTCGTCGG TAGTTTTGCC GAGCTGATGA GCTATGATTT TACCGCCAGC ATGGAACAGA CTCTCGATGA TGTTGCCAAA GGTGAACTGG ATTGGAAAAA AGTCCTCGAT GGCTTCTATG CCGACTTCAC TAAGCAATTA GAGAAGGCTG AGTTAGCACC GGAAGAGGGC GGTATGCGCC TCAATCAAAT GGTGATGACT AATATTAAGT GTCCGACTTG CGGTCGTCCA ATGGGGATCC GGACTGGCAC AACAGGGGTA TTCCTTGGTT GTTCGGGTTA CGAGTTGCCA CCAAAAGAAC GCTGCAAAAC TACCATGAAC TTAACGCCAG GCATTGAAGC GATAAGCGAC AGTGAGGATG CCGAGACCGA TGCACTGCGT GCTAAGCACC GCTGTGGTAT TTGCGGCACG GCGATGGACA GTTATCTTAT CGACGAAAAA CGCAAACTGC ATGTTTGTGG TAATAACCCT GTTTGTGAGG GCTATGAGGT CGAAGAAGGG CAATTTAAGA TCAAAGGTTA CGAAGGTCCA TTAATCGAAT GTGACCGTTG CGGCCATGAT ATGGAACTGA AAAACGGTCG TTTTGGTAAG TATTTCGGTT GTACTAATTC GGAATGTAAG AATACCCGTA AGTTACTGAA AAACGGTGAA GCGGCGCCAC CAAAAGAAGA TCCTATCTAT CTGCCTGAGC TGAAATGCAG CAAGTCTGAT GCGCATTTTG TGCTACGTGA TGGCGCGGCG GGGATTTTTT TAGCGGCCAG TACTTTCCCT AAATCACGGG AAACCCGCGC ACCACTGGTT GAAGAGTTAG TGAAATACCG TGAACTGTTA TGGCCTAAGT ATCAGTATCT TGCCGATGCA CCTATCGCCG ATGATGAGGG CAACAAAGCG GCGGTTAAGT TTAGCCGTAA GACCAAAGAG CAATACGTGG CGACCGAAGT TGGCGGTAAA GCAACCGGGT GGTCGGCTCA TTATGTGAAT GGTAAATGGG TGACAGAATC GACGGCGAAT AAAGCCAAGA AATAG
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Protein sequence | MEPISTFLRF FGANQTMGKS LVIVESPAKA KTINKYLGKE FIVKSSVGHI RDLPTSSSSD GTEKVKSAAE VKKMSPEEKA RYKKVKEHQA LVSRMGVNPE KGWAAKYQIL PGKEKVVKEL QALADSADQI YLATDLDREG EAIAWHLQEV IGGDSSRYQR VVFNEITKSA IQEAFSKPSA LDTNMVNAQQ ARRFLDRVVG FMVSPLLWKK VARGLSAGRV QSVAVRLVVE RESEIKAFVP EEFWDVHAQL NTPASEALRM EVVKYLDSAF EPTNEQQALA AVQALSSASF KVIAREDKAT QSKPSAPFIT STLQQAASTR LGFGVKKTMM MAQRLYEAGH ITYMRTDSTN LSQEALDSVR EMIGKEYGAK YLPAEPIRYG SKEGAQEAHE AIRPSNVNVE AAALTDMERD AQRLYELIWR QFVSCQMTPA QYDATKLTVK AGDYELKATG RILRFDGWTR VQTALKKKNE EDNTLPSVNE GDLLSLVELE PKQHFTKPPA RYSEASLVKE LEKRGIGRPS TYATIISTIQ ERGYVKVENR RFYAEKMGEI VSERLVGSFA ELMSYDFTAS MEQTLDDVAK GELDWKKVLD GFYADFTKQL EKAELAPEEG GMRLNQMVMT NIKCPTCGRP MGIRTGTTGV FLGCSGYELP PKERCKTTMN LTPGIEAISD SEDAETDALR AKHRCGICGT AMDSYLIDEK RKLHVCGNNP VCEGYEVEEG QFKIKGYEGP LIECDRCGHD MELKNGRFGK YFGCTNSECK NTRKLLKNGE AAPPKEDPIY LPELKCSKSD AHFVLRDGAA GIFLAASTFP KSRETRAPLV EELVKYRELL WPKYQYLADA PIADDEGNKA AVKFSRKTKE QYVATEVGGK ATGWSAHYVN GKWVTESTAN KAKK
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