Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_1653 |
Symbol | |
ID | 4257366 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 1943912 |
End bp | 1944607 |
Gene Length | 696 bp |
Protein Length | 231 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 638122313 |
Product | prolyl 4-hydroxylase, alpha subunit |
Protein accession | YP_737705 |
Protein GI | 114047155 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.135174 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000299116 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGGATTTTA TCGAAGTATA CCCTAATGCC ATACCCGATG ACCTGTGTGA TCGTCTCATT CTTGCATTTG AACAACATTC AGGTGTGGTT GATGGTCAGA CGGGGAATGG GGTTGACCTC GAAAAGAAGA TCAGCCGTGA TCTTACCTTA GATAATTTTG CCGATTTACA GCCACTCAAG AATGAGTTGT TGTCCTACAC GCTTAAGGGC GCGGCGGATT ACTTTACTCA ATATGCTATG GCGTTAATGG GCGCTGTATC TGTGTCGGTG AGTGACGAGC AAGGCCAAGC TGTGACGTTA ACGCCGAACA ATTTTCAGCG CCTCGGTAAG CCCAGAGCCG AAGCCTTAGT CAAATATTTG TATCGCAGCG GCAGTATTAA TATTCAAAAA TATCAAAAGA ATAAAGGTGG ATATCCCCAC TGGCATTCGG AACAATTTCC CCAGCTCAAC CACAATGAGG CGTTGCATCG TGTCGTCTTG TATATGTTCT ATCTCAATGA TGTGGAAGAG GGCGGAGAAA CTGAGTTTTA TTACCAGCAG CGTAAAATTT CACCTAAGAA AGGCACTATG GTAATAGCCC CTGCGGGTTT TACTCACTCC CATCGCGGCA ATATGCCTAT CAGTAATGAT AAATATATTG CCACTTCTTG GGTGATGTTT AACCGCGCCG AGCAGTTGTA TGCGGTATAT GGTTAA
|
Protein sequence | MDFIEVYPNA IPDDLCDRLI LAFEQHSGVV DGQTGNGVDL EKKISRDLTL DNFADLQPLK NELLSYTLKG AADYFTQYAM ALMGAVSVSV SDEQGQAVTL TPNNFQRLGK PRAEALVKYL YRSGSINIQK YQKNKGGYPH WHSEQFPQLN HNEALHRVVL YMFYLNDVEE GGETEFYYQQ RKISPKKGTM VIAPAGFTHS HRGNMPISND KYIATSWVMF NRAEQLYAVY G
|
| |