| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1561 |
|---|
| Symbol | |
|---|
| ID | 4258153 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 1820442 |
|---|
| End bp | 1822724 |
|---|
| Gene Length | 2283 bp |
|---|
| Protein Length | 760 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638122209 |
|---|
| Product | formate acetyltransferase |
|---|
| Protein accession | YP_737616 |
|---|
| Protein GI | 114047066 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1882] Pyruvate-formate lyase |
|---|
| TIGRFAM ID | [TIGR01255] formate acetyltransferase 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.404679 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.16507 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACA AAACTGAACT GTTTGCCAAC GCATGGGAAG GTTTTACACC TGGCGATTGG
AAATCTGAAG TCAATGTACG TGACTTTATT CAACAAAACT ATGCTCCCTA TGAAGGTGAC
GAGTCATTCC TAGCCGGTGC CACCGAAGCC ACAACCCAGT TGTGGGACAA AGTGATGGAA
GGCATCAAGC AAGAAAACCG TACCCACGCG CCAGTTGATT TCGATACTAA GATGGTTTCT
ACCATCACTT CCCATGACGC GGGTTATATC AATAAAGATT TAGAAACTAT CGTTGGTTTA
CAAACCGATG CGCCGCTTAA ACGCGCTATG TTACCTAACG GTGGTATTCG CATGGTTGAA
GGCTCATGTG CCGCCTACAA CCGCGAACTC GATGCCGATG TAAAATACAT CTACTCAGAA
CTGCGTAAGA CCCACAACCA AGGCGTATTC GACGTCTATA CCCCAGAAAT CATGGCATGT
CGTAAATCCG GCGTGTTAAC CGGTTTACCC GATGCCTATG GTCGTGGTCG TATCATCGGT
GACTATCGCC GCGTGGCTCT GTACGGTATC GACTTCTTAA TGAAGGACAA ATTCGCCCAG
TTCAGCTCAC TTCAAGCGCA GTTCGAAGCC GGCGAAGATT TATCTAACGT TATCCAACTG
CGTGAAGAAA TTGCCGAGCA GCACCGCGCT CTAGGTCAAA TGAAACAAAT GGCCGCGAAA
TACGGTTTCG ATATTTCTCG CCCAGCCACT AACGCCAAAG AAGCGATCCA GTGGACTTAC
TTCGGTTATT TAGCCGCAGT GAAGAGCCAA AACGGCGCGG CGATGTCTTT AGGCCGTACT
TCAACCTTCC TTGATATCTA CATTGAACGC GATCTGAAAA ACGGCACCAT CACTGAGCAA
CAAGCTCAAG AAATGATTGA CCATTTCGTG ATGAAACTGC GTATGGTGCG TTTCCTACGT
ACTCCAGAAT ACGATGAGTT GTTCTCAGGC GACCCAATTT GGGCAACTGA ATCTATCGGC
GGTATGGGCT TAGATGGCCG TACACTGGTA ACCAAATCTA GCTTCCGTTT CTTAAACACT
TTATACACTA TGGGCCCAAG CCCTGAGCCA AACATCACTG TGCTCTGGTC GGACAAACTG
CCTGTAGGCT TTAAAAAGTA CTGTGCGAAA GTGTCTATCG ACACCAGCTC TATCCAGTAC
GAAAACGATG ACTTAATGCG TCCAGATTTC CAATCTGACG ATTACGCTAT CGCCTGCTGC
GTGAGTCCTA TGGTTGTGGG TAAACACATG CAGTTCTTCG GCGCCCGTGC AAACTTGGCA
AAAACCATGT TGTATGCGAT CAACGGCGGC GTTGACGAAA AACTGAAAAT CCAAATCGCG
CCAAAAGCCG ACCCAATCAC CGACGAAGTA TTAAGCTTCG ATGACGTGAT GAATCGCTTA
GACGGCCTGA TGGATTGGTT AGCGACCCAA TATGTCACAG CACTGAACTC AATCCACTAC
ATGCACGACA AGTACTCCTA CGAAGCCGCG TTAATGGCGC TGCACGACAG AGATGTACGT
CGCACCATGG CCTGTGGTAT CGCAGGGCTT TCAATCGCGG CCGACTCACT GTCTGCCATC
AAGTACGCTC AAGTAAAACC TGTACGTGAT GAAAACGGCA TTGCCGTCGA CTTTGAGATC
AGCGGTGATT ATCCAAAATT TGGTAACAAT GACCCACGTG TCGACGATAT CGCCTGTGAC
TTAGTTGAAC GTTTTATGTC GAAGATCCGC GACCGTAAAA TGTACCGCAA CGCGATCCCA
ACTCAGTCAA TTCTGACCAT CACCTCGAAC GTGGTTTATG GTAAGAAAAC CGGTAACACG
CCAGACGGTC GTCGTTCAGG TGCGCCATTT GCACCGGGTG CAAACCCAAT GCATGGCCGT
GATGAAAAAG GCGCGATTGC CTCGTTAACC TCAGTGGCGA AACTGCCTTT TGCCCACGCA
CAGGACGGTA TCTCTTACAC CTTCTCCATC GTGCCTAATG CCTTAGGTAA AGATGAAGAC
GGTCGCCGTA CCAACTTAGC GGCGTTGATG GACGGATATT TCGCCCACAA CGAAGGACAC
GAAGGCGGTC AACACTTGAA CGTGAACGTG ATGAACCGTG AGATGCTCGA AGATGCGGTT
GTCAATCCTG ACAAGTATCC GCAGCTAACC ATTCGTGTAT CGGGTTACGC AGTGCGCTTT
AACTCATTGA CCCCAGAGCA GCAGCAAGAC GTGATCACAC GTACTTTCAC AAAAGGTCTG
TAA
|
|---|
| Protein sequence | MTDKTELFAN AWEGFTPGDW KSEVNVRDFI QQNYAPYEGD ESFLAGATEA TTQLWDKVME
GIKQENRTHA PVDFDTKMVS TITSHDAGYI NKDLETIVGL QTDAPLKRAM LPNGGIRMVE
GSCAAYNREL DADVKYIYSE LRKTHNQGVF DVYTPEIMAC RKSGVLTGLP DAYGRGRIIG
DYRRVALYGI DFLMKDKFAQ FSSLQAQFEA GEDLSNVIQL REEIAEQHRA LGQMKQMAAK
YGFDISRPAT NAKEAIQWTY FGYLAAVKSQ NGAAMSLGRT STFLDIYIER DLKNGTITEQ
QAQEMIDHFV MKLRMVRFLR TPEYDELFSG DPIWATESIG GMGLDGRTLV TKSSFRFLNT
LYTMGPSPEP NITVLWSDKL PVGFKKYCAK VSIDTSSIQY ENDDLMRPDF QSDDYAIACC
VSPMVVGKHM QFFGARANLA KTMLYAINGG VDEKLKIQIA PKADPITDEV LSFDDVMNRL
DGLMDWLATQ YVTALNSIHY MHDKYSYEAA LMALHDRDVR RTMACGIAGL SIAADSLSAI
KYAQVKPVRD ENGIAVDFEI SGDYPKFGNN DPRVDDIACD LVERFMSKIR DRKMYRNAIP
TQSILTITSN VVYGKKTGNT PDGRRSGAPF APGANPMHGR DEKGAIASLT SVAKLPFAHA
QDGISYTFSI VPNALGKDED GRRTNLAALM DGYFAHNEGH EGGQHLNVNV MNREMLEDAV
VNPDKYPQLT IRVSGYAVRF NSLTPEQQQD VITRTFTKGL
|
|---|
| |