| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1485 |
|---|
| Symbol | |
|---|
| ID | 4257762 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 1728383 |
|---|
| End bp | 1728991 |
|---|
| Gene Length | 609 bp |
|---|
| Protein Length | 202 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 638122134 |
|---|
| Product | tRNA/rRNA methyltransferase (SpoU) |
|---|
| Protein accession | YP_737541 |
|---|
| Protein GI | 114046991 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0219] Predicted rRNA methylase (SpoU class) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0129545 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.548122 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTACAT CCACGACGAC TTCGGTTGAT TCCATGGCAA AACCTGAGGT GCAGCAAGCG
GTTTATATCG GTCTAGTCAA TCCGAAAACC CCGACGAACG TAGGCGGCAT TATGCGCGCT
TCGGGCTGTT ATGGTGTCGA TGCGGTGTTC TACACAGGCA AACGCTATGA GTATGCTGCC
CGTGGGCCGC AGCAATATAA CGCCGATACG CAGAGCGCCG CCGAGCGCAT TCCGTTAACT
GGGGTGGCCT CCCTACTCGA TGCGCTCCCC TCTGACACTA AGCTGGTGTG CGTGGATTTA
GTCCTAGGGG CGACACCCTT ACCTGAATTT GTGCATCCCG AGAAAGCCTT TTATGTGTTT
GGCCCAGAGG ATGGCACCAT TGGCCAAGAG ATTATCGATA GAGCCGATGC CGTGGTGTAT
GTGCCTACGG TAGGGTGCAT GAATCTGGCG GCCTCGGTGA ACGTACTGCT TTACGATAGA
TTGGCGAAAG CCCATCGCGA GCAGCTATCA GCTCAAACCG AGTTCGATGG CGATGCCTTG
ATCCGCCAAA GTCGCGACAA CAATAATCGC ACCCGAGTAA AAACGACTAA GCAGGGGTCT
TCGCTCTAG
|
|---|
| Protein sequence | MSTSTTTSVD SMAKPEVQQA VYIGLVNPKT PTNVGGIMRA SGCYGVDAVF YTGKRYEYAA
RGPQQYNADT QSAAERIPLT GVASLLDALP SDTKLVCVDL VLGATPLPEF VHPEKAFYVF
GPEDGTIGQE IIDRADAVVY VPTVGCMNLA ASVNVLLYDR LAKAHREQLS AQTEFDGDAL
IRQSRDNNNR TRVKTTKQGS SL
|
|---|
| |