Gene Shewmr7_1449 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_1449 
SymbolsecD 
ID4256350 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp1682454 
End bp1684304 
Gene Length1851 bp 
Protein Length616 aa 
Translation table11 
GC content51% 
IMG OID638122098 
Productpreprotein translocase subunit SecD 
Protein accessionYP_737505 
Protein GI114046955 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00202636 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0146122 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTTAAATA AATACCCAAT GTGGAAAAAC ATTATGGTGG TGCTCGTCAT CGCCATAGGT 
TGTTTCTATG CCGTACCTAA CCTGTTCGGT GAAGATCATG CGGTGCAAGT AGTGGCGACT
CGAGGTGCTG AAGTCACGGC ATCTACCCAA GCCAGAGTGA ACGAGCTGTT AGCCAGTAAG
GGCATTGCGG TAAAACGCTC TGAGCTTGAA AAAGGTCAAT TGTTGGTTCG CGTACAAAAC
GCGGATCAAC AGTTGCTGGC CAAGGAAACC ATCGCCGAAG ATTTAGGTGA TAAGTTTACT
GTGGCACTCA ACCTTGCCCC TGCCACACCG CAGTGGCTCG AGTCTATGGG CGGTAGCCCA
ATGAAACTCG GTCTGGACCT TCGTGGTGGT GTGCACTTCT TAATGGAAGT GGACATGGGC
GAAGCCATCC GCAAGATGGA AGAGGCCAAG GTGGCCGATT TCCGTTCTCA ATTACGTGAA
GAAAAAATCC GTTACGCGGG CATTCGCAAC AATGCGCAAG GTATCGAGAT TAAATTCCGT
GATGCCGAAA GTTTAGCCAG TGCAGAACGT TTCTTAAAAT CTCGCAGCAA CGATATGGTG
TTCAGCGATG TGAGCAAGGG TGAAGACTTT GCCCTGCAAG CCGTCATGAG CGAAACCTAT
CTCAAGCAGA TTAAAGAAGA AGCGCTGCAG CAAAACATTA CCACTATCCG TAACCGTGTG
AACGAGTTAG GGGTCGCTGA GCCTGTGGTT CAACGCCAAG GTGCTGAGCG TATTATCGTT
GAACTGCCAG GTGTACAAGA CACTGCCCGC GCCAAGGAAA TCTTAGGTGC GACGGCATCG
ATTGAATTCC ACATGGTGGA CGATAAGGCT GACCCCAATG CGGCGCAATC AGGCCGTGTA
CCTGCGGGTT CTGAGGTGTA TCAACGCCGT GAAGGCGGTC AAGTGGTACT GAAGAAAGAA
GTGATGCTAA CGGGTGATCA TATCACTGGC GCACAACCTA GCTTCGACCA ATATAGCCGT
CCACAGGTGA GCATCAACCT CGATGCTAAA GGCGGTACCA TTTTCTCTAA CGTGACTAAG
GACAATATCG GTAAACCGAT GGCGACCTTG TTCATCGAAT ATAAAGACAG CGGTGAGCGT
AACGCCGATG GCAGCGTCAA GATGCAGAAA ATCCAAGAAG TGATTTCTGT GGCGACCATT
CAAGCGCGTT TAGGCCGTAA CTTTGTGATC ACCGGCTTAA GCCATGGTGA AGCACAAAAC
CTCGCACTGC TGCTGCGTGC CGGTGCCCTG ATTGCGCCCG TATCGATTGT GGAAGAACGT
ACTATCGGTC CAAGCCTGGG TGCGGAAAAC ATCGAAAGCG GTGTGCAAGC CATGATTTGG
GGTATGGCAG TCGTACTTAT CTTTATGCTG GTTTATTACC GTAGTTTCGG CTTGATCGCT
AACTTAGCCT TAACGGCCAA CTTAGTGATG GTGGTTGGGG TGATGTCTAT GATCCCTGGC
GCCGTACTAA CCCTGCCTGG TATTGCCGGT ATGGTGTTAA CAGTGGGTAT GGCGGTTGAC
GGTAACGTAC TGATTTACGA GCGTATCCGT GAAGAATTAC GTGCAGGTCG TAGCGTACAG
CAGGCGATTC ACGAAGGTTA CGGTAACGCA TTCTCTACCA TCGCCGACGC TAACATCACT
ACCTTCTTGA CAGCTTTGAT CTTGTTCGCC GTGGGTACTG GCGCGATCAA AGGCTTCGCG
GTGACCCTGA TGATCGGTAT TGCGACATCG ATGTTTACCG CTATCGTGGG TACTCGCTCA
ATCGTGAACG CGATTTGGGG CGGTAAGCGC GTGAAGACGC TGTCTATCTA A
 
Protein sequence
MLNKYPMWKN IMVVLVIAIG CFYAVPNLFG EDHAVQVVAT RGAEVTASTQ ARVNELLASK 
GIAVKRSELE KGQLLVRVQN ADQQLLAKET IAEDLGDKFT VALNLAPATP QWLESMGGSP
MKLGLDLRGG VHFLMEVDMG EAIRKMEEAK VADFRSQLRE EKIRYAGIRN NAQGIEIKFR
DAESLASAER FLKSRSNDMV FSDVSKGEDF ALQAVMSETY LKQIKEEALQ QNITTIRNRV
NELGVAEPVV QRQGAERIIV ELPGVQDTAR AKEILGATAS IEFHMVDDKA DPNAAQSGRV
PAGSEVYQRR EGGQVVLKKE VMLTGDHITG AQPSFDQYSR PQVSINLDAK GGTIFSNVTK
DNIGKPMATL FIEYKDSGER NADGSVKMQK IQEVISVATI QARLGRNFVI TGLSHGEAQN
LALLLRAGAL IAPVSIVEER TIGPSLGAEN IESGVQAMIW GMAVVLIFML VYYRSFGLIA
NLALTANLVM VVGVMSMIPG AVLTLPGIAG MVLTVGMAVD GNVLIYERIR EELRAGRSVQ
QAIHEGYGNA FSTIADANIT TFLTALILFA VGTGAIKGFA VTLMIGIATS MFTAIVGTRS
IVNAIWGGKR VKTLSI