Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_1449 |
Symbol | secD |
ID | 4256350 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 1682454 |
End bp | 1684304 |
Gene Length | 1851 bp |
Protein Length | 616 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 638122098 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_737505 |
Protein GI | 114046955 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00202636 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.0146122 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTTAAATA AATACCCAAT GTGGAAAAAC ATTATGGTGG TGCTCGTCAT CGCCATAGGT TGTTTCTATG CCGTACCTAA CCTGTTCGGT GAAGATCATG CGGTGCAAGT AGTGGCGACT CGAGGTGCTG AAGTCACGGC ATCTACCCAA GCCAGAGTGA ACGAGCTGTT AGCCAGTAAG GGCATTGCGG TAAAACGCTC TGAGCTTGAA AAAGGTCAAT TGTTGGTTCG CGTACAAAAC GCGGATCAAC AGTTGCTGGC CAAGGAAACC ATCGCCGAAG ATTTAGGTGA TAAGTTTACT GTGGCACTCA ACCTTGCCCC TGCCACACCG CAGTGGCTCG AGTCTATGGG CGGTAGCCCA ATGAAACTCG GTCTGGACCT TCGTGGTGGT GTGCACTTCT TAATGGAAGT GGACATGGGC GAAGCCATCC GCAAGATGGA AGAGGCCAAG GTGGCCGATT TCCGTTCTCA ATTACGTGAA GAAAAAATCC GTTACGCGGG CATTCGCAAC AATGCGCAAG GTATCGAGAT TAAATTCCGT GATGCCGAAA GTTTAGCCAG TGCAGAACGT TTCTTAAAAT CTCGCAGCAA CGATATGGTG TTCAGCGATG TGAGCAAGGG TGAAGACTTT GCCCTGCAAG CCGTCATGAG CGAAACCTAT CTCAAGCAGA TTAAAGAAGA AGCGCTGCAG CAAAACATTA CCACTATCCG TAACCGTGTG AACGAGTTAG GGGTCGCTGA GCCTGTGGTT CAACGCCAAG GTGCTGAGCG TATTATCGTT GAACTGCCAG GTGTACAAGA CACTGCCCGC GCCAAGGAAA TCTTAGGTGC GACGGCATCG ATTGAATTCC ACATGGTGGA CGATAAGGCT GACCCCAATG CGGCGCAATC AGGCCGTGTA CCTGCGGGTT CTGAGGTGTA TCAACGCCGT GAAGGCGGTC AAGTGGTACT GAAGAAAGAA GTGATGCTAA CGGGTGATCA TATCACTGGC GCACAACCTA GCTTCGACCA ATATAGCCGT CCACAGGTGA GCATCAACCT CGATGCTAAA GGCGGTACCA TTTTCTCTAA CGTGACTAAG GACAATATCG GTAAACCGAT GGCGACCTTG TTCATCGAAT ATAAAGACAG CGGTGAGCGT AACGCCGATG GCAGCGTCAA GATGCAGAAA ATCCAAGAAG TGATTTCTGT GGCGACCATT CAAGCGCGTT TAGGCCGTAA CTTTGTGATC ACCGGCTTAA GCCATGGTGA AGCACAAAAC CTCGCACTGC TGCTGCGTGC CGGTGCCCTG ATTGCGCCCG TATCGATTGT GGAAGAACGT ACTATCGGTC CAAGCCTGGG TGCGGAAAAC ATCGAAAGCG GTGTGCAAGC CATGATTTGG GGTATGGCAG TCGTACTTAT CTTTATGCTG GTTTATTACC GTAGTTTCGG CTTGATCGCT AACTTAGCCT TAACGGCCAA CTTAGTGATG GTGGTTGGGG TGATGTCTAT GATCCCTGGC GCCGTACTAA CCCTGCCTGG TATTGCCGGT ATGGTGTTAA CAGTGGGTAT GGCGGTTGAC GGTAACGTAC TGATTTACGA GCGTATCCGT GAAGAATTAC GTGCAGGTCG TAGCGTACAG CAGGCGATTC ACGAAGGTTA CGGTAACGCA TTCTCTACCA TCGCCGACGC TAACATCACT ACCTTCTTGA CAGCTTTGAT CTTGTTCGCC GTGGGTACTG GCGCGATCAA AGGCTTCGCG GTGACCCTGA TGATCGGTAT TGCGACATCG ATGTTTACCG CTATCGTGGG TACTCGCTCA ATCGTGAACG CGATTTGGGG CGGTAAGCGC GTGAAGACGC TGTCTATCTA A
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Protein sequence | MLNKYPMWKN IMVVLVIAIG CFYAVPNLFG EDHAVQVVAT RGAEVTASTQ ARVNELLASK GIAVKRSELE KGQLLVRVQN ADQQLLAKET IAEDLGDKFT VALNLAPATP QWLESMGGSP MKLGLDLRGG VHFLMEVDMG EAIRKMEEAK VADFRSQLRE EKIRYAGIRN NAQGIEIKFR DAESLASAER FLKSRSNDMV FSDVSKGEDF ALQAVMSETY LKQIKEEALQ QNITTIRNRV NELGVAEPVV QRQGAERIIV ELPGVQDTAR AKEILGATAS IEFHMVDDKA DPNAAQSGRV PAGSEVYQRR EGGQVVLKKE VMLTGDHITG AQPSFDQYSR PQVSINLDAK GGTIFSNVTK DNIGKPMATL FIEYKDSGER NADGSVKMQK IQEVISVATI QARLGRNFVI TGLSHGEAQN LALLLRAGAL IAPVSIVEER TIGPSLGAEN IESGVQAMIW GMAVVLIFML VYYRSFGLIA NLALTANLVM VVGVMSMIPG AVLTLPGIAG MVLTVGMAVD GNVLIYERIR EELRAGRSVQ QAIHEGYGNA FSTIADANIT TFLTALILFA VGTGAIKGFA VTLMIGIATS MFTAIVGTRS IVNAIWGGKR VKTLSI
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