| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1428 |
|---|
| Symbol | |
|---|
| ID | 4258544 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 1657454 |
|---|
| End bp | 1658476 |
|---|
| Gene Length | 1023 bp |
|---|
| Protein Length | 340 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 638122062 |
|---|
| Product | TRAP dicarboxylate transporter, DctP subunit |
|---|
| Protein accession | YP_737484 |
|---|
| Protein GI | 114046934 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000272228 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.49264 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATTGA ATCAACAGAT GGGTATTACA CGTCCATTGA AAACCGTCGC AAAAATGCTG
GCACTGGCCT CAGTGTTTGC GACCAGCTTT AACGTGTTTG CGGCGCCCGT TGAAATCAAG
TTCTCCCACG TGGTTGCTGA AAACACGCCA AAGGGTCAAA TGGCGTTGAA GTTTAAAGAA
TTAGTTGAAC AACGTTTACC TGGTGAATAT ACGGTCAGTG TATTCCCTAA CTCACAGTTA
TTTGGGGATA ACAACGAGTT AGCGGCACTT CTGTTAAACG ACGTGCAATT TGTAGCGCCT
TCTCTTTCTA AATTTGAGCG TTACACTAAG CGCCTACAGG TTTTCGACCT GCCATTCCTA
TTCAATGACA TGGATGCTGT AAACCGTTTC CAACAAGGCG AAGCAGGTCA AGCATTGCTG
AACTCAATGA ACCGTAAAGG GATTGTGGGT TTAGGTTATC TGCATAATGG TATGAAGCAG
TTCTCTGCTA ACACACCACT CAAACAACCT TCTGATGCTA AAGGTTTAAA ATTCCGCGTG
ATGGCATCTG ACGTATTAGC AGCCCAGTTT GATGCAGTTG GTGCTATCCC AGTGAAGAAA
CCTTTCTCTG AAGTGTTCAC TCTGCTGCAA ACCCGTGCGA TTGACGGTCA AGAAAACACT
TGGTCAAACA CCTACTCACA AAAATTCTAT GAAGTTCAAA GCCATATTAC CGAAAGTAAC
CACGGCGTGT TGGACTACAT GGTCGTGACC TCTGACGCCT TCTGGAAAGG CTTACCCGCG
GATAAACGTA AAGTGATCAA AGAAGCGTTA GATGAATCTA TCGCCTTAGG TAACAAGATC
GCTGCTGAAA AAGATAACGA AGACAAGCAA TTAATCCTTG ATTCTAAACG TTCTCAACTG
GTGACCTTAA CACCAGAAGA ACGTCAAAAA TGGATTGATG TAATGAAACC TGTTTGGGCG
AAGTTTGAAG ACCAAGTAGG TAAAGATGTG ATTGAAGCCG CTGTTGCTGC AAATAAACAA
TAA
|
|---|
| Protein sequence | MTLNQQMGIT RPLKTVAKML ALASVFATSF NVFAAPVEIK FSHVVAENTP KGQMALKFKE
LVEQRLPGEY TVSVFPNSQL FGDNNELAAL LLNDVQFVAP SLSKFERYTK RLQVFDLPFL
FNDMDAVNRF QQGEAGQALL NSMNRKGIVG LGYLHNGMKQ FSANTPLKQP SDAKGLKFRV
MASDVLAAQF DAVGAIPVKK PFSEVFTLLQ TRAIDGQENT WSNTYSQKFY EVQSHITESN
HGVLDYMVVT SDAFWKGLPA DKRKVIKEAL DESIALGNKI AAEKDNEDKQ LILDSKRSQL
VTLTPEERQK WIDVMKPVWA KFEDQVGKDV IEAAVAANKQ
|
|---|
| |