| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1425 |
|---|
| Symbol | |
|---|
| ID | 4258541 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 1653439 |
|---|
| End bp | 1655250 |
|---|
| Gene Length | 1812 bp |
|---|
| Protein Length | 603 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638122059 |
|---|
| Product | periplasmic sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_737481 |
|---|
| Protein GI | 114046931 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.524026 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.827969 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGCCCA TGACGCCCAA GGCCAAACAA CGTCTTTTAA TGACCATAGT GTTACTTGCG
GGCTTATTTG CCATCTTAAA ATTAACCTAC TGGGTGCACT TTTATCAGGG CAAAATTGAA
ATCCAACAGC AATCAGAAAA ACAACTTAAA GAGCTGGTTA GCTTCCTCGA TGGCGCCCTG
TCGCGTTACG AGAGCATCCC TCATGTTTTG TCGACCAACC CCATGCTCGC CAATGTGCTT
AACGATCAAC AAAACCCAAA GAAAGTACAA GAACTTAACC TGTACTTGGA AGAAATTCAG
CATGTGACCG AGGCATCCGA TATATATCTT ATCGACGCCC TTGGCATTGC GATTGCCGCC
AGCAACTGGC AACAGAGCTT TTCGTTTATC GGTAAAGACT ACTCCTTCAG ACCCTATTAT
ACCGACGCGA TTTCAGGCAA TTTGGGCCGC TACTATGCGG TGGGCACCAG TTCGGATAAA
CGCGGCTTTT ACTTTTCTTA CCCCATTTAT CAGCAAGGTG CGAAAGGCAT TCTAGGTGCC
ATAATTGTGA AAGTGGATAT CGCCGATATT GAGCAGCAGA GCACCAGTAT TGCGATGGCG
GGCCAGTATC AATTCCTCAT CAGCGATCCC GACGATATCG TGTTTATCTC CAGTGTCGAT
GAATGGCGCT TAGCCTCGCT TACGCCGCTG ACTCAGGCCA AACAATATGC CTTAAATGCC
TCGAAACGTT ACGCCGAGCG GCCGATTGGC GAATTACTGA TTAAGCCCCA ATACCAAGAA
GATAGCCTGA GTAATGGCCA TGTCTATCAA ATCCGCTCTG GTAATAGTCA GGCGCAATAT
ATGGACACCC ATCATTTGAT GACCAAAGCG GGTTGGCGGG TACATATTCT GGCGCCGATG
AAGCCTTTGC TCGAGTCTAT GCCCGCGCTC ATGCTGTTAT CGGCATCGAT TTATTTACTG
CTCGCCTTAG GCGTACTCTT TAGCAGCGAG CGGCGGCGCA ACCTACATCG TATGCAACTC
GCCCAGAGTT TGTTAGAGCA AAGGGTGGAA GAGCGCACCC AAGATCTGCA GCAGGCCAAC
AATCGCCTCA AAGACACTCA GGATGAACTC ATTCAAGCGG CTAAGTTGAC TGTGATAGGT
AGTCTATCCG CCAGTATCAA CCATGAACTG AATCAACCCT TAGCCGCCCT TCGCAGCTAC
GCGCAAAATA CCCAAACCTT TCTTGCCCGC AATATGCCGG ATAAAGCCTC TGATAATCTT
AAAATTATTA TCGAGCTGAC CGACCGATTA GCCGATATTG TCGGCCAATT TAAGAGTTTT
ACCCGCAAGA GCCAAGGCAC GGACAGCGCC ACCGATCTCA AGGGCTGTAT CAAGCAAGCC
CTGACCATAG TCCAGCCCGA AATCGACAAA CAAGGGGTTG AGCTCGATGT GCTGCTCCCC
GAAGGCCAAT ATCAGGTCTG GGGTGATAAG GTGAGACTGC AACAAGTGTT TGTGAATATT
ATGAGCAACG CGATTGTTGC CATGCAGCAA TCGTCAAAAC GAACACTGAG TATTAGGGTA
AACTGTCAGG ACAAGTTCTG TATCAGTATT CAGGACTCGG GCCCAGGGGT GCGTGAGAGC
CAGATGGAGA AGATTTTTGA GCCCTATTTC ACCACCAGCG AACGTACAGG GCTTGGACTC
GGGTTATCCA TTTCCCAGCG CATTATCGAG TCCATGCAGG GGCAAATTAA TGTTGCCAAT
GCCGAGGACG GCGGCGCCAT TTTCCACATT ATTTTACCGA TTTATTTAGC CGAGGAACGT
CAGTCATCAT GA
|
|---|
| Protein sequence | MLPMTPKAKQ RLLMTIVLLA GLFAILKLTY WVHFYQGKIE IQQQSEKQLK ELVSFLDGAL
SRYESIPHVL STNPMLANVL NDQQNPKKVQ ELNLYLEEIQ HVTEASDIYL IDALGIAIAA
SNWQQSFSFI GKDYSFRPYY TDAISGNLGR YYAVGTSSDK RGFYFSYPIY QQGAKGILGA
IIVKVDIADI EQQSTSIAMA GQYQFLISDP DDIVFISSVD EWRLASLTPL TQAKQYALNA
SKRYAERPIG ELLIKPQYQE DSLSNGHVYQ IRSGNSQAQY MDTHHLMTKA GWRVHILAPM
KPLLESMPAL MLLSASIYLL LALGVLFSSE RRRNLHRMQL AQSLLEQRVE ERTQDLQQAN
NRLKDTQDEL IQAAKLTVIG SLSASINHEL NQPLAALRSY AQNTQTFLAR NMPDKASDNL
KIIIELTDRL ADIVGQFKSF TRKSQGTDSA TDLKGCIKQA LTIVQPEIDK QGVELDVLLP
EGQYQVWGDK VRLQQVFVNI MSNAIVAMQQ SSKRTLSIRV NCQDKFCISI QDSGPGVRES
QMEKIFEPYF TTSERTGLGL GLSISQRIIE SMQGQINVAN AEDGGAIFHI ILPIYLAEER
QSS
|
|---|
| |