| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1421 |
|---|
| Symbol | |
|---|
| ID | 4258432 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 1645206 |
|---|
| End bp | 1647179 |
|---|
| Gene Length | 1974 bp |
|---|
| Protein Length | 657 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638122055 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_737477 |
|---|
| Protein GI | 114046927 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR03507] decaheme c-type cytochrome, OmcA/MtrC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.515821 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAATAT TCACATCTAA AAAACTGGCA TACTTAGTGG CATTAACCCT AACGGGAGCA
CTCGTAGGCT GTGGTAGTGA TGGTAAAGAC GGTAAAGACG GTGTTGATGG CACAGACGGT
CAAGACGGCA AACCTGGTGA ATCTTGGTCA ATTCCCGCAG TTACAAGTTC CACTGTGACG
AATGTTAAGG TAATCAACTA CACCTTAGGT GAAGGAACCA TCAGTTACGA ATTTGAAGTA
ACCAATGAAG ATGGTGCACC AGTTAATGGT TTGGTTGCTG TTCAAGCTAA AGTGGCCGCA
CTCTCTGCAA AAGGCTTTAT CAACAACCGT ACTGAAGCTG ATAAGAATGG CGTGGCTGAC
AACGTGCAGA TCGGTGGTGC AGTGACCCAA GCGACTGAAG GTGCAGTGTT AACCTCAGTT
GGTGACGGCC ATTACACCTT TACAGCCCCC ATGGCTGGCG TCAATACGGG TACTGAAGGC
ATTGTCTGGT TAAAAGTGGG TGGCGATAAA ACCACCAGCA TTGCAAGCTC GGCTGAACTA
GTCGTTAACA AGCCAGAAGG AGCCTTCTCA ACAACGACTG AAGCCTGTTA TTCCTGTCAC
GTTGATTACG CTCAAGGTAA TGGTAAACAT TCAAGCCATG TTGCCCAAGG CATGAACGGT
GAAGTAAACT TCGTTGAAGG TTGCTTAGTG TGCCACGGCT CTGTTAGTAA AACTGCTATG
AACGAACAGG GTTTCTCTAT CGGTGGTTAC GCAACCAATA CCCTGTCTAA GATTGGTCAC
ATCAATCACC AAGGTTTTGA AACAGGCTTT ACAGTGATGA ACTGTAGTAC TTGTCACGTA
GAAGCACCGA AAAACATCAA TATTTCTGGT CCAGGTTGTA TCGATTGCCA TGACACAGGC
GGCGTACCAG GTGATATCCA GCCAAGTAAT GGCTCAGATG TTCGCCCAAT GCACGAGAAA
AAACAAAGTG TTAATGCAAA CAAAGCGATT AAAGACAGCT ATACAGTCGC TGGCACCCCA
CTAGCATTAA ATGCTGATGG TTTATGGTGT ACCACAATGT CGCTCTACAA AGACGGCAAT
CTGGTTGACC TGCATGCATT ATATGTTTCA GGACAAACGG CCTATAACGC AACAACGCCT
GTTAACTACG CAGGCTCTTA CCTCCATGGC ACATATAACA AGTCAGTCAT TGGCCGTATT
GCACAAAACT ACACTGAAAG CTATGAAGCC GATGGTAGCA AAACCATGTG TTATACCGGC
GTTGACCTGA CTAACTGGAC AGGTGCAGGC CTAATGGCAT CACTACGTGT CAGCTTTATG
GCTGAAAACT ATACTGGCAG TGAACAAAAT GTCATTACTA TCCACGGTTA TACTGATGTT
ACAGATCCTA CAACAGGTAC TGTGGCAAAA TATGATCGTC GCCATAATGT CGCAGACGAC
TCTTGTACTA CCTGTCATAA CACTGAAGCA AACTTCCACA AAAATGGTAA CTTTGCCGAA
GGAGGTATTG GTTGTATAGC CTGCCATAAC AACGGGCAAG ACCGTAGAGC TGGCGGTTCA
GGTCCAGGAT TTGGTCCAAT GATCCACAGT ATGCACTGGG GTGTTGGCGC ACAAAGCACC
GATGCTGATG GCAAAACGAC CACCAATGCA GCGAATGTGA TCGCGCCACA AACAAGTTGT
GTTGTATGTC ACGCTGATGG AGCGATGGAT CTTAATGCCA TCCCGAATCA ATTCGTCAAG
GCTCGCGCTT ATGGTACTAG CAATAAAATG GCTAGCCCAG TAACCGCTAA CTGTTATGCT
TGCCATAGTC AAGATTCGGC AATCAGCCAC ATGAAATCAA TGGGTGGTAC TATTTCAGAA
GATGTTCCTG CTACTGAATG GTACAAGCTA ACGACCCAAG AATCTTGCGC CGTTTGCCAT
AACCCTGGTA GCAGCTCTGG TATCGACAAG TACCATAACT TTACCCGTAA ATAA
|
|---|
| Protein sequence | MRIFTSKKLA YLVALTLTGA LVGCGSDGKD GKDGVDGTDG QDGKPGESWS IPAVTSSTVT
NVKVINYTLG EGTISYEFEV TNEDGAPVNG LVAVQAKVAA LSAKGFINNR TEADKNGVAD
NVQIGGAVTQ ATEGAVLTSV GDGHYTFTAP MAGVNTGTEG IVWLKVGGDK TTSIASSAEL
VVNKPEGAFS TTTEACYSCH VDYAQGNGKH SSHVAQGMNG EVNFVEGCLV CHGSVSKTAM
NEQGFSIGGY ATNTLSKIGH INHQGFETGF TVMNCSTCHV EAPKNINISG PGCIDCHDTG
GVPGDIQPSN GSDVRPMHEK KQSVNANKAI KDSYTVAGTP LALNADGLWC TTMSLYKDGN
LVDLHALYVS GQTAYNATTP VNYAGSYLHG TYNKSVIGRI AQNYTESYEA DGSKTMCYTG
VDLTNWTGAG LMASLRVSFM AENYTGSEQN VITIHGYTDV TDPTTGTVAK YDRRHNVADD
SCTTCHNTEA NFHKNGNFAE GGIGCIACHN NGQDRRAGGS GPGFGPMIHS MHWGVGAQST
DADGKTTTNA ANVIAPQTSC VVCHADGAMD LNAIPNQFVK ARAYGTSNKM ASPVTANCYA
CHSQDSAISH MKSMGGTISE DVPATEWYKL TTQESCAVCH NPGSSSGIDK YHNFTRK
|
|---|
| |