| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1385 |
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| Symbol | |
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| ID | 4257278 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 1603394 |
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| End bp | 1604407 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638122019 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_737441 |
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| Protein GI | 114046891 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | [TIGR03589] UDP-N-acetylglucosamine 4,6-dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00862014 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGTTAAACA GCAAAAAAGT TCTTATCACC GGTGGAACTG GATCTTTTGG TAAGCAGTTT
ATTAAAACAA TTCTTGAGCG CTATCCTAAC GTTAAGCGGA TTGTGATTTT CTCACGTGAT
GAATTAAAGC AATCTGAGTT GCGTTTGAAA TATCCACAAA AAGATTATCC ACAACTACGT
TTTTTCATCG GTGATGTTCG TGATCGCAAT CGAATGGTTC AAGCGTGTGA AGGTATTGAT
GTGATTATTC ATGCGGCCGC GATCAAGCAG GTTGATACCG CCGAATACAA TCCGACTGAG
TGCATTCGCA CTAACGTTGA TGGTGCAGAG AACGTGATCC ACGCAGCACT GCAATGTGGT
GTTAAGGATG TCGTAGCCCT GTCTACTGAC AAAGCCTGTG CGCCGATCAA CCTGTATGGA
GCCACTAAGC TGACATCTGA CAAGTTGTTT ACTGCTGCCA ATAATATTAA AGGCTCGCGT
GATATTCGTT TCAGTGTAGT GCGCTATGGC AACGTAATGG GTTCACGTGG TTCGGTGATC
CCATTTTTCC TTAAAAAGCG TGATGAGGGT GTATTGCCAA TCACCCATGA AGAGATGACG
CGCTTTAATA TTTCACTGCA AGATGGGGTT AACATGGTGA TGTTCGCCAT TGAACATCAT
CTGGGTGGTG AAATTTTTGT GCCAAAAATT CCATCTTATA AAATCCTTGA TATTGCCGAA
GCAATTGCTC CTCGGTGTGA AACCAAGGTA GTGGGTATTC GCCCAGGTGA AAAACTACAT
GAGGAGATGA TCACTGATAC TGACTCTTTG AATACTATCG ACCTAGGCCG TTATTACGCA
ATATTACCCT CAGTATCATT TAGTCATACT GAAGAGGACT ATATTAAGCA TCATAACGCA
CATAAGGTAC CATTTGGCTT TAAATATAAC TCTGGTACGA ATACTGATTG GGAAACTGTC
GAGTCACTTC GTGAACTGAT TAAAACCCAT GTTGATTCTA ATTTTGAAGT GTGA
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| Protein sequence | MLNSKKVLIT GGTGSFGKQF IKTILERYPN VKRIVIFSRD ELKQSELRLK YPQKDYPQLR
FFIGDVRDRN RMVQACEGID VIIHAAAIKQ VDTAEYNPTE CIRTNVDGAE NVIHAALQCG
VKDVVALSTD KACAPINLYG ATKLTSDKLF TAANNIKGSR DIRFSVVRYG NVMGSRGSVI
PFFLKKRDEG VLPITHEEMT RFNISLQDGV NMVMFAIEHH LGGEIFVPKI PSYKILDIAE
AIAPRCETKV VGIRPGEKLH EEMITDTDSL NTIDLGRYYA ILPSVSFSHT EEDYIKHHNA
HKVPFGFKYN SGTNTDWETV ESLRELIKTH VDSNFEV
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