| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1380 |
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| Symbol | |
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| ID | 4257273 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | - |
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| Start bp | 1595622 |
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| End bp | 1597091 |
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| Gene Length | 1470 bp |
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| Protein Length | 489 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638122014 |
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| Product | amino acid/peptide transporter |
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| Protein accession | YP_737436 |
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| Protein GI | 114046886 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3104] Dipeptide/tripeptide permease |
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| TIGRFAM ID | [TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00016017 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.180173 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGTAG CAAAACCACA GGGGACGATG CTTGGTCATC CCAAGGGCCT ATTCCTACTT
TTTACAACCG AACTTTGGGA ACGTTTTAGT TATTATGCAA TGCGCGCCAT TCTGGTGCTG
TATTTAGTCG ATAAAGTTCA GAGTGAAGGG GGGCACGGTT TAGGATGGTC GCAAGCCGAT
GCGATTTCGC TCTACGGAAC ATTTACAGGT CTGGTTTACT TAACGCCTTT ACTCGGCGGT
TGGTTAGCTG ACACCTTTTT AGGTCAACGC CGCGCCATCA TGATTGGCGG TACGTTAATG
GCCGCAGGTC AATTTATTCT TGGTACTCCT CATGCGTGGG TACCAGGTAT GGAAACTGAA
GTATTCTATG TCGGCTTAGG CACTTTAATC CTAGGTAACG GTCTCTTTAA ACCTAATATT
TCCACTATGG TGGGTGACCT ATACGAAGAA GGCGACCATC GCCGTGATGG TGCTTTCACC
ATTTTCTACA TGGGTATCAA CGTTGGTGCT TTCCTCTCCG GTATTATCGT AGGCTCTGTT
GTCGCAGCTT ATGATGGTAA CTTCCAAGCC GGCTTTATCT GTGCGGGCAT TGGTATGATC
CTGTCGTTAA TCATCCAACT TCTGTTTGCA CAAAAATTAC TCGGTAATAT TGGTAGAACT
CCAGCCGCTA AACTTGAGCG TGAAAAAGCT GCTGAAAAAG GCGAAGTACG TAAAGAACCT
CTCACTAAAG TTGAGCGTGA TCGTATTAAA GTCATCATGG TGATGGGTCT ATTCACTATC
ATCTTCTGGG CAGGCTTTGA GCAAGCTGGC GGCCTGATGA ACCTGTTCAC TAACGACTTT
ACCGACCGTA TGATCGGTAC TTGGGAAGTA CCTACCACTT GGTTCCAATC ATTAAACGCG
ATGTTTATCG TGATTTTCGC ACCTGTTGTA GCCTCTATTT GGGTACGACT CGGTAAGAAT
GAACCTAACT CACCTGTGAA GTTTGCTTTG GGCCTAGTGC TGTTAGCCGT TGGTTTCCTA
TTTATGATCG GTGCCGTGGT TGAAATGGGC GGTGATGCTT CTGCTAAATC AAGCATGTGG
TGGTTAGTCG GTGCTTATTT CTTCCATACC ATGGGGGAAC TTTGCTTATC ACCAATCGGT
TTATCTATGG TCACTAAGTT AGCCCCTCTG CGTATCGCTT CGTTAATGAT GGGTTCTTGG
TTCCTTTTCG TTGCTGCAGC GAACAAAATT GGTGGTGTGG TTGGTTCATT TATCGGCCAT
GGCGGCGAAA AAGAGGAGCA ACTCGCTAAT GCGATGGCGA TCTTCTCCGG TATCGCCATT
ACAGCTGCAC TTTCCGGTGT GATCTTATAC TTTATGGCGG ACAAATTAGT CGATTGGATG
CATGGCGCAG AAAGCAAGCA TCACAACGAA GCCGAAGCGT TAGAAGATGA AATTGCTGTA
ACCGGTGAGC ATGAAGCGAT TAAACGTTAA
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| Protein sequence | MSVAKPQGTM LGHPKGLFLL FTTELWERFS YYAMRAILVL YLVDKVQSEG GHGLGWSQAD
AISLYGTFTG LVYLTPLLGG WLADTFLGQR RAIMIGGTLM AAGQFILGTP HAWVPGMETE
VFYVGLGTLI LGNGLFKPNI STMVGDLYEE GDHRRDGAFT IFYMGINVGA FLSGIIVGSV
VAAYDGNFQA GFICAGIGMI LSLIIQLLFA QKLLGNIGRT PAAKLEREKA AEKGEVRKEP
LTKVERDRIK VIMVMGLFTI IFWAGFEQAG GLMNLFTNDF TDRMIGTWEV PTTWFQSLNA
MFIVIFAPVV ASIWVRLGKN EPNSPVKFAL GLVLLAVGFL FMIGAVVEMG GDASAKSSMW
WLVGAYFFHT MGELCLSPIG LSMVTKLAPL RIASLMMGSW FLFVAAANKI GGVVGSFIGH
GGEKEEQLAN AMAIFSGIAI TAALSGVILY FMADKLVDWM HGAESKHHNE AEALEDEIAV
TGEHEAIKR
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