Gene Shewmr7_1258 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_1258 
Symbol 
ID4258183 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp1468363 
End bp1469520 
Gene Length1158 bp 
Protein Length385 aa 
Translation table11 
GC content48% 
IMG OID638121891 
Productputative oxygen-independent coproporphyrinogen III oxidase 
Protein accessionYP_737314 
Protein GI114046764 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases 
TIGRFAM ID[TIGR00539] putative oxygen-independent coproporphyrinogen III oxidase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0161407 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAGTGA ATGTGTCACC TCAGTTAACC CTGCCGCCGT TGAGCTTGTA CATCCATATC 
CCTTGGTGTG TACAAAAATG CCCTTACTGC GACTTTAACT CCCATGGACA AAATGGCGAA
TTACCCCAGC AGGCCTATGT GGATGCGCTG CTAGCGGACT TACGCCAAGA CTTGCACTTA
GTACAAGGCC GTAAGCTGCA CACTATTTTT ATTGGTGGTG GAACGCCGTC TCTGTTTGAT
GCCAATCAAA TCAAACGGAT ATTGGATGGC GCCAATGCGC TAATCCCCTT TAGTGACGAT
ATTGAAATCA CCATGGAAGC CAACCCTGGT ACCCTAGAGC ACGATGACTT TAGTGCCTAC
CGCGCCGCCG GGGTCACCCG ATTATCCATT GGGGTACAAA GCTTCTCTAA GGATAAGCTC
AATCTACTAG GACGGATCCA CGATCAAAAC GAAGCCCAAA CTGCCGCCCA AAAAGCCAGC
CAAGCGGGTT ATTTAAGTTT TAACTTGGAT TTGATGCACG GACTTCCCAA TCAAAGTTTT
GCTGAGGCCA TGGCGGATAT AGATACCGCG GCGGCGCTCA ATCCGCCGCA TTTGTCTTGG
TATCAACTGA CGATTGAGCC CAATACCCTG TTCCACTCAA AACCGCCGCA ACTACCCGAC
GATGAAGATC TCTGGCAGAT CTACGAACAA GGGCAACAAA AGTTAGCGGC ACTCGGTTAT
GAGCAGTATG AAATCTCTGC CTATGCCAAA CCCGGCTATC AATGCAGGCA TAACCTTAAC
TATTGGCAGT TTGGCGATTA TTTAGGCATA GGCTGCGGTG CCCATGGCAA AGTGACCTTG
CCCGAAGAGA ACCGCATTAT TCGCACGGTT AAAATCAAAC ACCCTAAGGG TTATTTAGCT
GCCGACAACT ATCACTTCGA GCAGACTGAG GTCGCCGAAG AAGATCGCGC CCTCGAATAC
TTGATGAATC GTCTGCGCTT AATGACGCCT ATCCCTAAGC AAGAGTTTGA AGACAGAACC
GGTTTACACC GAGATACGTT GAAAGAGGGA ATGGAAAAGG CCAAACAACG GGGTTTACTG
ACCGAATCGG CTGAACATTG GCAATTAACC AGTAAAGGTC ACATGTTTGT GAACGATTTG
CTGACGCAAT TTTGTTAA
 
Protein sequence
MSVNVSPQLT LPPLSLYIHI PWCVQKCPYC DFNSHGQNGE LPQQAYVDAL LADLRQDLHL 
VQGRKLHTIF IGGGTPSLFD ANQIKRILDG ANALIPFSDD IEITMEANPG TLEHDDFSAY
RAAGVTRLSI GVQSFSKDKL NLLGRIHDQN EAQTAAQKAS QAGYLSFNLD LMHGLPNQSF
AEAMADIDTA AALNPPHLSW YQLTIEPNTL FHSKPPQLPD DEDLWQIYEQ GQQKLAALGY
EQYEISAYAK PGYQCRHNLN YWQFGDYLGI GCGAHGKVTL PEENRIIRTV KIKHPKGYLA
ADNYHFEQTE VAEEDRALEY LMNRLRLMTP IPKQEFEDRT GLHRDTLKEG MEKAKQRGLL
TESAEHWQLT SKGHMFVNDL LTQFC