| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1236 |
|---|
| Symbol | |
|---|
| ID | 4258720 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 1448083 |
|---|
| End bp | 1449564 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 638121865 |
|---|
| Product | deoxyribodipyrimidine photo-lyase type I |
|---|
| Protein accession | YP_737292 |
|---|
| Protein GI | 114046742 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0415] Deoxyribodipyrimidine photolyase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGATA ATCAACCCCA AGCGGCAAAG CACGCGTTGA TGTGGTTTCG CCAGGATCTG
CGTCTAACGG ATAACCAAGC GCTGACGGCT GCCTGTGATT GGGTGCGGCA AGCGCCTGGC
GCAAAACTCA GGGCGATTTA TATTGCGACT CCGAGCCAAT GGCTCAGCCA CGATATGGCG
CCGATCCAGA TTGATTTTAT CCAGCGGCAT GTGAATTTGC TCGCCCAAGG ACTCGCAAGC
CTAGGGATTG AATTTGAGCT TATTCAGCTC GATAGCTTTA AAGAGGTGCC CGCTTTTTTA
GCGAGTTACT GTGAAAAGCT TGGGGTTGAA CGGGTGTTCG CGGGGCGAGA ACCCGAAATC
AACGAGCAAA AGCGCGACCA AGCCTGTCTC GATGCGGGTA TCCCCTTGGT GCTTAGTGAC
GAACACTGCC TATTGCCGCC GGGCACAGTG CTTAACTTAA GCGGTGATAT GTATAAGGTG
TTCACGCCCT TTAGCCGCAA GTGGCGAGAA GTTGCCGCCA AGCGCGCCAT TTTGCCGCTT
GCTGTACCTG CGCCGCTTGG CCCTATGTTA CCTGAACCAA AGCCAATCAG TTTTAAAGAA
CGTTTCCCAT TCACTAGCAA GCTAACCTCG AGCGAGCAAT GGGCGGCGGG AGAGGGGCAG
GCAAAACGTA TTCTTACCGC ATTTATTCAG CAAAAAGCCC AAGACTATAA ACAGGATAGG
GACTTTCCTG CTCTCGAGGG GACCAGTGTT ATCTCCCCTT ATTTGGCGCT GGGCGTGCTG
AGCCCAAGGC AATGTATCGC GGCGCTGCTT GGGCGTTTTC CCGAGGTGAT TGTCGATGAT
ACTAGCCCTG GGCGAACCTG GTTGAATGAG CTGATCTGGC GGGAGTTTTA TCGCCATTTG
TTAGTCGCCT TTCCAGATTT ATCCAAGGGG CACAACTTTA ATCGTCAGGC CGACCATGTG
CAGTGGCGCA ACAACCAAGC TGAGTTTTTG GCGTGGTGCG AGGGCAAAAC GGGTTACCCG
ATTGTAGATG CGGCGATGCG CCAGCTTAAT CAAACCGGCT GGATGCACAA TCGGTTGCGT
ATGGTGGTGG CGAGCTTTTT AACTAAACAC TTGCTTATCG ATTGGCGCTG GGGGGAACGC
TATTTCCGCC AGCATCTTAT CGACGGCGAT CTGGCGGCTA ATAACGGTGG CTGGCAATGG
TCGGCGGGCT GTGGCTGCGA TGCCCAGCCT TATTTCCGCA TTTTTAATCC TATCAGCCAG
AGCGAAAAGT TTGATCCAGA TGGCAGCTTT ATCCGTAAGT ACTTACCAGA GCTGGCATCT
TGGGGAATCA AGCGTTTGCA CCAACCCAAT ATGCAAAAAA CGCCTTCGTT ATTTGAGGTG
CAAATGCTGG AGTCTGACTC GGCTTATCCC TGTGCGATTG TGGAGCACAA TGCGGCAAGG
GCGAGGGCGC TAGCGGTACT TGGGGTGCTG AAAAAGGCCT AG
|
|---|
| Protein sequence | MSDNQPQAAK HALMWFRQDL RLTDNQALTA ACDWVRQAPG AKLRAIYIAT PSQWLSHDMA
PIQIDFIQRH VNLLAQGLAS LGIEFELIQL DSFKEVPAFL ASYCEKLGVE RVFAGREPEI
NEQKRDQACL DAGIPLVLSD EHCLLPPGTV LNLSGDMYKV FTPFSRKWRE VAAKRAILPL
AVPAPLGPML PEPKPISFKE RFPFTSKLTS SEQWAAGEGQ AKRILTAFIQ QKAQDYKQDR
DFPALEGTSV ISPYLALGVL SPRQCIAALL GRFPEVIVDD TSPGRTWLNE LIWREFYRHL
LVAFPDLSKG HNFNRQADHV QWRNNQAEFL AWCEGKTGYP IVDAAMRQLN QTGWMHNRLR
MVVASFLTKH LLIDWRWGER YFRQHLIDGD LAANNGGWQW SAGCGCDAQP YFRIFNPISQ
SEKFDPDGSF IRKYLPELAS WGIKRLHQPN MQKTPSLFEV QMLESDSAYP CAIVEHNAAR
ARALAVLGVL KKA
|
|---|
| |