| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1231 |
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| Symbol | |
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| ID | 4258262 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 1440987 |
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| End bp | 1443623 |
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| Gene Length | 2637 bp |
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| Protein Length | 878 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638121860 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_737287 |
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| Protein GI | 114046737 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTGATA TTACAATTTC ACCAAAACAG TTGTCGGATT GGGCAAACGA TTTACAGTTG
GTTGCCGATA TGACTCAGTC ACATGCTGTG GTCCTACAGG CCAGTGTGGC GGGTGACTAT
CGTCTATTAG TTCAGTCGTC TCAATGCCAA TCATCTGATA TTGAAGCCCT TATTCGGCAT
TTTAATCTTA AAGCGCATTT AAACCTGCAT CAAAATGCCA CCCCTAAAGT TAAAGTTGCT
TCTTCTGCTG ACACCGCTTA TAACCCCTTC AATGAATCAC GCACCTTTAG TCACCATCAG
GTGGACCTTC CCGAGGATAT TCGTCAGGCG TGTGCCTATA AGCGCGCATT GATCCAAAAT
ATCAGCAGCA ATCTCCAATG GTGCGATACT GGGCTTGGCA GTTTGATTTA CCTGCCGATC
CTCTGGACTT CGGGGGCGCA TTTTGGCGTC TTGTGTGTGT ATAACAGCGA TCCTTTACAT
TTAGGGGATA GGGCGCTGCA ATTGGCTTCG CTCACGGTCA ATAGCCTACA GCTCAATTTG
AGCGAGTTGC TAAAGCAGCA TAAATACGCC TTGGAGGCGC AGCGCGGGCA AGTCTATGCG
CCCGATGTCA TTGACCTACA AACCTTTATC GATAGTTTTG AAGAACATAT TTGGGTTAAA
AATACCGAAG GTGTTTATAC CATCTGCAAC CATAGTGTTG AGAAAGCCTG GGAGTTGCCA
CGCAGTGAAA TTGTCGGCAA GACGGATGAA GACCTTTTTG GTAAAGAAAT CGCCGAGATT
TTTCTCAATG GTGACAGGCT TGCCATTGAA GCGGGGACAC CGATTATCGT CGCCGAGTGT
TTAGACGGTG AAAAACAGAA TAAACACTTA TGGTTAGAAA CCCTTAAAAT TCCGGCTACT
ACGGCCGACG GCGCGCTTGC TGGTGTCATT GGCATGACCC GTAATATCTC CAAGCATAAA
GAAGTGGAAG AACAGCTCAC GCTCGCCACC AATGTGTTTA AACATACCCT CGAAGGTGTG
GTGATCACCG ACAGGCACGG CAATATCACC GATGTGAATG GTGCCTTCTA TGAAATCACT
GGCTACTCGC GGGAAGAGTT GCTCGGTCAA AATCCACGAT TATTTAACTC GGGTCGCCAC
GAGAAAGCCT TTTTCGATGC CATGTGGAAT CACTTACTCG AGACGGGTAA GTGGAATGGG
GAAATTTGGA ATCGCCGCAA GGATGGCACT ATCTTCCCGC AAAATATCAC CATCAGCACC
ATTTATGATG AGTTAGGTGA TGTGCGCTAT TTTGTGGCGG TATTTTCCGA TATTTCCGCT
CAAAAACAGA GCGAGGCTCA GCTAGCCCAT TTAGCTTATT TCGATCCTTT GACCCATCTG
CCAAACCGCA TGAAGCTGAT GATGCAGCTC AAACAAGAAC TCAGACATGC AAAAAGGCTC
AATGCCCAAC TAGCCACAGT GTTTATTGAT GTGGATTTGT TTAAGCATAT CAACGACAGT
TTCGGCCACA GTATTGGCGA CGAAATGCTA GTGGAGCTGG CCAAACGGTT ACGCTGCCGA
TTGCAGGAGC AAGATGTGTT GTCGCGGATC GGCGGTGATG AGTTTGTGGC GCTGATCTCT
GGCATTCAAA GCCATGAGGA TGCCGCCGCG GCGATTAATC AATTACGCCA AGTGTTTGAG
CAGCCTTTTG TGGTCAGCAC TGGGGATCAT CTTCGTCTGA CAGCCAGTAT GGGAGTGTCA
ATCTATCCCA ATGATGGCAG TAACGCCGAT ACCTTACTGC GTAACGCCGA TGCCGCCATG
TATCGCGCTA AGAGCGAGGG CCGTAATAAT TTTGCCTTCT ACACTGAGTC GCTCACCAAG
CAATCGATTG AACATTTAAA GCTGCAGAGT GCACTCTATG GTGCGCTCGA GCAGAACGCT
TTGTATTTGA TGTATCAGCC TAAATTGGAT TTAGCCAGCC GTAAGACCAT TGGGGTTGAG
GCGCTACTGC GTTGGAATGA CCCCATATTG GGGCAAATTT CTCCTGGGGT ATTTATTCCC
GTCGCCGAGA AAATCGGACT GATTTACGAT ATTGGTTTGT GGGTGATCGA AACCGCTTGT
CTTCAAGGTG TGCGTTGGCT CGCCGAAGGT ACACCCTTTG GCCGGATCGC GGTTAACGTT
GCGGGGCAAC AGTTACAACG TAGCTCCTTT GTCGAGGATG TGAAACGCAT CCTGACGCAA
ACAGGATTGC CCGCCACTTG CCTTGAGCTT GAAGTGACTG AAAGCGTGAT GATGCATAAC
CCCGATGTGG CGATTCGCGA CTTAAAGCTG CTAGGGGATC TTGGCATTGA GCTTTCGGTC
GATGATTTTG GTACCGGATA TTCCTCCCTT AACTATCTGA AAAAACTACC GATTCATAAG
CTTAAAATCG ACCAATCCTT TGTGCGGGAT ATTCCGTTTG ACACCAACAA TACCGCTATC
GCTAAAGCCG TAATTGCCCT AGGGCATGCG CTCAAGTTAG AGATCGTGGC AGAAGGGGTC
GAGACTCAAG CACAGGCCGA GTTTTTAACC CAAAACCTCT GCGATCAGGC GCAAGGGTAT
CTCTTCAGCC GTCCGCTATT ACCCGCGGAT GTTGAGGCGT TTTTAGCGAA AGCCTAA
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| Protein sequence | MIDITISPKQ LSDWANDLQL VADMTQSHAV VLQASVAGDY RLLVQSSQCQ SSDIEALIRH
FNLKAHLNLH QNATPKVKVA SSADTAYNPF NESRTFSHHQ VDLPEDIRQA CAYKRALIQN
ISSNLQWCDT GLGSLIYLPI LWTSGAHFGV LCVYNSDPLH LGDRALQLAS LTVNSLQLNL
SELLKQHKYA LEAQRGQVYA PDVIDLQTFI DSFEEHIWVK NTEGVYTICN HSVEKAWELP
RSEIVGKTDE DLFGKEIAEI FLNGDRLAIE AGTPIIVAEC LDGEKQNKHL WLETLKIPAT
TADGALAGVI GMTRNISKHK EVEEQLTLAT NVFKHTLEGV VITDRHGNIT DVNGAFYEIT
GYSREELLGQ NPRLFNSGRH EKAFFDAMWN HLLETGKWNG EIWNRRKDGT IFPQNITIST
IYDELGDVRY FVAVFSDISA QKQSEAQLAH LAYFDPLTHL PNRMKLMMQL KQELRHAKRL
NAQLATVFID VDLFKHINDS FGHSIGDEML VELAKRLRCR LQEQDVLSRI GGDEFVALIS
GIQSHEDAAA AINQLRQVFE QPFVVSTGDH LRLTASMGVS IYPNDGSNAD TLLRNADAAM
YRAKSEGRNN FAFYTESLTK QSIEHLKLQS ALYGALEQNA LYLMYQPKLD LASRKTIGVE
ALLRWNDPIL GQISPGVFIP VAEKIGLIYD IGLWVIETAC LQGVRWLAEG TPFGRIAVNV
AGQQLQRSSF VEDVKRILTQ TGLPATCLEL EVTESVMMHN PDVAIRDLKL LGDLGIELSV
DDFGTGYSSL NYLKKLPIHK LKIDQSFVRD IPFDTNNTAI AKAVIALGHA LKLEIVAEGV
ETQAQAEFLT QNLCDQAQGY LFSRPLLPAD VEAFLAKA
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