Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_1194 |
Symbol | |
ID | 4258137 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 1393536 |
End bp | 1394516 |
Gene Length | 981 bp |
Protein Length | 326 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638121815 |
Product | RNA polymerase, sigma 28 subunit |
Protein accession | YP_737250 |
Protein GI | 114046700 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCGCA TAAATAGCAC TGCCGCAGAA GAACTAGTAG ATTTTTCCGT AGATACCGCA GAGTTTGATC TCGATAAAGA GGATATTGCC GCCGATTTAG TTCAAGAACT AGGACTCGAA CAACAGGTTC AAGACGACCT GCAAAAAAAT CTTGATGCCA CACAGCTCTA TTTAGGTGAA ATAGGGTTTT CCCCACTGCT TAGCGCAGAA GAAGAAGTTT ACTTTTCCCG TAAAGCCTTA AAAGGCTGCG AAAAATCCCG TAATCGCATG ATTGAGAGTA ACCTGCGACT CGTGGTTAAA ATTGCCCGTC GTTACAATAA TCGTGGCCTA GCGCTGCTAG ATTTAATCGA AGAGGGTAAT CTTGGCTTGA TCCGTGCCGT GGAAAAATTT GACCCAGAAA GAGGCTTCCG TTTCTCAACC TATGCGACTT GGTGGATCAG ACAAACGATT GAACGTGCCA TCATGAATCA AACCCGCACG ATTCGCTTGC CAATCCATGT GGTAAAAGAG CTCAACGTAT ATTTACGTAC GGCTCGGGAA TTAGCGCAAA AACTTGACCA CGAACCTACG GCAGAAGAAA TTGCCGAGAA ACTGCAAGTA TCCAGTGTTG ACGTCAGTCG TATGCTGAAG CTCAACGAGA AGATCACCTC TGTCGATATC CCCTTAGGTG GCGATAACGA CAAGGCGTTA CTCGATGTGC TTGCCGATGA CGACAACGTA GGCCCTGATT ACAAAGTACA AGACGAAGAC ATTTCAAACT CAGTGGTGAA ATGGCTCAAC GAACTCAATA CCAAGCAACG AGAAGTGTTA GCGCGCCGTT TTGGTTTATT AGGTTATGAA CCCTCAACCC TTGAAGACGT GGGCGCAGAA ATTGGCCTCA CCCGTGAACG TGTTCGCCAA ATTCAAGTGG AAGCCCTTAA ACGCCTACGT GATCTGCTGG GCGCTCAAGG TCTCTCTGTA GAGGCACTAT TTAGAAACTA A
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Protein sequence | MSRINSTAAE ELVDFSVDTA EFDLDKEDIA ADLVQELGLE QQVQDDLQKN LDATQLYLGE IGFSPLLSAE EEVYFSRKAL KGCEKSRNRM IESNLRLVVK IARRYNNRGL ALLDLIEEGN LGLIRAVEKF DPERGFRFST YATWWIRQTI ERAIMNQTRT IRLPIHVVKE LNVYLRTARE LAQKLDHEPT AEEIAEKLQV SSVDVSRMLK LNEKITSVDI PLGGDNDKAL LDVLADDDNV GPDYKVQDED ISNSVVKWLN ELNTKQREVL ARRFGLLGYE PSTLEDVGAE IGLTRERVRQ IQVEALKRLR DLLGAQGLSV EALFRN
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