Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_1188 |
Symbol | ispD |
ID | 4258131 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 1388646 |
End bp | 1389395 |
Gene Length | 750 bp |
Protein Length | 249 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 638121809 |
Product | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
Protein accession | YP_737244 |
Protein GI | 114046694 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1211] 4-diphosphocytidyl-2-methyl-D-erithritol synthase |
TIGRFAM ID | [TIGR00453] 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.340354 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATACCG TATTAGAAGC CGCGCCGCAG GTCGAAACCC AAGTTGCAGT TCAAATTGAT CCTTTCTCGC ACCATGTGGT CGCGATTGTG CCCGCCGCGG GGATAGGCAG TCGCATGGGC GCGGGCAAAC CCAAGCAATA TTTAACCTTG CTGGGGCAAA GCATTCTGGC TCATACCTTA GACAAGTTAT TGTCCCATCC GCAAATTAAC CAAGTGATTG TGGCACTGCA TCCAGAGGAT AACGAGTTTG CTGCGTTACC GCAGGCCAAG CATCCCAAGC TGGTGACTGT CATTGGCGGC TCTGAGCGCG CCGACTCGGT ACTGGCGGCT CTCGATAAGG CGCCTGATAA TGGTTGGGCT TTAGTACACG ATGCGGCCAG ACCCTGCCTG ATGGCGCAAG ACATAGATAA ATTGTTGGCA TCGCGGGTGC ATTTTCCCCA GGGGGCGATT TTGGCCATGC CTGTGCGGGA TACCATGAAG CGCGCCAATA GCTTAGGTGA AATTAGCTCG ACCGTTTGCC GCGATAATCT CTGGCATGCG TTGACGCCGC AGTTATTTCC AACCTCCTTG TTGCGATTAC ATTTAAAAGC CGCGCTTGCC GCGGGTGCTG TTGTGACCGA TGAGGCCTCG GCGATGGAGT GGGCGGGTAT TTCCCCTGGT TTGGTCGCTG GGCGGGCGGA TAACATTAAA GTGACCCATC CCGATGATTT GGAGTTGGCA GAGCTCTTTT TACTGCGCGC AAATGCTTGA
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Protein sequence | MDTVLEAAPQ VETQVAVQID PFSHHVVAIV PAAGIGSRMG AGKPKQYLTL LGQSILAHTL DKLLSHPQIN QVIVALHPED NEFAALPQAK HPKLVTVIGG SERADSVLAA LDKAPDNGWA LVHDAARPCL MAQDIDKLLA SRVHFPQGAI LAMPVRDTMK RANSLGEISS TVCRDNLWHA LTPQLFPTSL LRLHLKAALA AGAVVTDEAS AMEWAGISPG LVAGRADNIK VTHPDDLELA ELFLLRANA
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