Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_1180 |
Symbol | |
ID | 4258123 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 1373948 |
End bp | 1381261 |
Gene Length | 7314 bp |
Protein Length | 2437 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638121801 |
Product | YD repeat-containing protein |
Protein accession | YP_737236 |
Protein GI | 114046686 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3209] Rhs family protein |
TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.265366 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTTGCCTC TGTGGACACC GCACCGTCAC TCATCTTTTG CCGCTTTTAT ATTGCTATTG GGGTTGTCTG TGGGGGCACC GAGTGAGGCG GCGCTGACAA AACCTGATGT TGAAATTGAC CCTATATTGC CAAGTATTCC TTTACCTGTA GCAATACCTT CTCTTTCCGG TAGTCGTTTT TCGTCAAGTG TCGAATTACG CTGGAGTATT GATTGCTCTG TCACTGCCGT TAATATCCAA GAATCCATCA ATAATCAGTC TTGGACAACA ATCTATACTG GATTAGGTCA AGCGGATAAT ACAGCTGCCT ATGCTACGTT TGCTGTTGGG GGGGATGTTT GCAGTGGTGA TTGGTCAAGC AAACGATTAT TGCAACTCCC TAATAAGACC CTCCCAGGTT ATTACTACCG CATCAATGCT TGCAAAGGTT CATTGTGTAG CGCTTATAGC CCTTCTATTC TTGTTGGCAC TCCTTCTGCG CCTTCTACCC CCTCGGCTCC AGCCTCTATC TCGACTCCTG CAACCAATAC AACAGGGGCG TTTAGCGTTT CTTGGGCTGG CGTCAGTGGC GCTACGCGTT ATGAGTTACA GCAACGCATT AATGGTGGCG TATGGGTTGC GAAATATTCT GGTACGGCCA CCAGTTATGC ATTGTCGGGA CTCGCTTCGG GCACCTATCA ATATCAAGCG CGGGCTTGCT CAACGGCGTG CAGTGCCTGG AAGTTATCAA GTAATACTCA GGTCAGTTTG CCCGTGCTTG GTAGTGATTG GAAAAACCTA TCGCGGGTGA CGGTTGCCGA TGCGGGCGGT AGTGATATCG AGCCCGCTGA AGTTGTTGAT TTAAATGCAG CAGCGGTTAA GGGGCAAGCT GGCGTCTCGG GTGGCCAAGC AAGTTATCAC ATTCCTATCG ATTTACCGCC AGGACGTAAT GGTGTTCAGC CTTCTATATC GCTTAGCTAT AACTCCCAAG GGGGTAATGG CATTTTAGGT GTGGGTTGGT CACTCAATGC TGGCTCAAGC ATTAGTCGCT GTGGTGCAAC CTTTGCGCAG GATGGTTTTA CCCGTGCGGT CACCTTTAAT GCCTCAACCG ATAGGTTGTG TCTTGACGGG CAGCGTTTAA TTGTTGCGAG TGGCAGTTAT GGGGCAAGCA ATGCTGAATA TCGCACTGAG ATGGATTCCT TCGTTAAAGT GGTACAGCAC GGCAACATTA ATGACAGTAA CAGCAGTTTT ACCGTCTATA AACCTGATGG TAGTCGAGCC ACCTATGGCG CAAACGCCAA TAGTCGCTTT GTGCCAAGCG GGTTAAGCAC AGCACTCAGT TGGAAGGTGA CCCAGGAGTC TTATTCCAAT GGTGCTAATA CCATCGATTA TCAATACGAT ACGAGCGTGG CGGGTGAGCA TCTTCTTAGC CAGATTTTAT ATACAGGTAG TTTGGGCGCA TTAGGTGATA GGAATATCAC ATTTTATTAT CAGCCTCGGA CTGACAAGCG TAAAAGTTAT CTGGCCGGAG GGCTAACAAC CAGTACTCGT TTGTTATCAG AGCTTAAGGT CAATGGTGCA GGAGGACAAT CAGTTCATCA ATATCAGTTT GATTATCAAC TGAGTCCGGC TAGCGGGCGC CACTTATTAC GAGCGCTAGC GCAGTGTGAT GCATTAGGAC ACTGCACACC GCAAACTCAA CTGACTTGGC GCGATAGCGC ATCGACAGTT AAGGCCGATG AACTCCTTAT TGGTGGGCAA GCGGTATTTT CAGGTGAGTT GGACATTAAT AAAGTGACCC CGCATGGCGA TGCTAATGGT GATGGTTCCA CCGATTTCCC TGGATATGAC TCAAATGCAG AGCAGGACAT GCTGGGTCAA AATGGGTTTA CTCATGAGAA AGCTTGCTAT AACGATTATG TCTCCGATGG TTGGATTTGT GTTGCATTCG ATGCGGACCA TGACGGTAAA GTCGACCCCT TTAAATCCAT CAACAACATC TTACATATTC AATTATCTGC ATCAGGGGCA GCTTCGTATG TGTCAACGGG CATCCCTTTT AATCCGAATC GCTTTCCAAG CCCTGATAGG CTAATGAGCG CGACTGACCT CAACGGAGAT GGGGATGTTG ACCTGATGGT CTTTACTGTT GTGAGCGGTA AAGGCTATTG GCGGGCTTAT TTAAATACGG GTAACGCATC AACGCCTTAT TCCGCGAATT CCTTTCAATT AATCCATGAG ACCGCAATAG ACCCTAAACT GGGAAGTTGG CCAGCAAGAC CTGAAGTTGA TGTCACTATG GCGGGTGATA TTGATGGCAA TGGGATGGTG GATTTTGTGG TGTCAAGCTT GGGCGGCAGT GGTGCGGCGA ATGCCCCTGT CCCCGTGTTG CGAAGTTTCA TCTTAAATAA CAGCACACCG CAACAATGGA GTGTGCAATG GTCAAGTGCT CCAACTTATC CATTCCATAC TGGGGATGGT TTTCATTTTT TCCAAAAGCT GATTGATATT AATGGTGATG AATTAGCGGA CATTATTTCC TGGCGCATGG TAAATAATGA CCGCGTGATT GGTTATGAAC TTAATCAGGG ACGCGCCACG TTTGCCCCTT GGGTGGCTTT TGCGGGCAAT CTACATTTGA AAGAGCGTTT CCATTCGGTG GTGGTCACGG CGCAAGAGCC TATGGATGTA ATTTACCCGC AATACTTTGA CAGCATGCAA ACGGCTGACA TCGATTTAGA TGGTATTGAG GAGATATTAC TTCCAGGTCA GAGGGTGATT ACAGGTTGTG CCTATGTGAT GTTTCCCGGT GGGACTTCGG GCAGCGGCAT CAAAAGGACA CTCTGTGGTG ATGCGCTCTA TGGGGATTTG CCTGTAAACA GTTTTAATAC GGTTCCCAGC AAACCGATTA CCAGTTCAGA TTTTGATGAT TCGATTTATC AATACGATGC AATTAAATTC GTGTTGCAAG TCGATGGCCG CTGGGGCTTG GTAAAGCAAT CCACCCCATA TTACGGCTCT GCCCATGAAT CCCGCTTGGT GGATACATTT GGGGATGGTC TGGTTGATAT GCTCACAACC TATGGGCCAC GCGTGCCTGG CACGGGACAG TTTAACGAAA CGTGGATACA AAACCCGGGT TCAAGCATGT GGGGCACGCG CTATGGCGCT TACCTCAGCC GTAACTATGG CTCTGGTAAC GGACAAACTA CCAACGATTA TGCTGCTACA GATTACCTGC AAGCCGTTAC TGACGGTCTA GGTAATCGTA GCGAATGGCG TTATCGCCCA CTGTCAACCG GAGAAGGCAG TGCTGACCAA GCTAAGCTTT ATACTACAGA CCATAATGAG GTTGGTTCCG GTTATGTCCA TTTCGCCTCC AGTATGTATG TGGTGCAGTC CTTTAAGCAA AGCAACGGAC AGAGTGGCGA AAATGAAACC CAATATGCCT ATAAAGGCGC GATGTACAAC CTACAAGGAC GTGGCTTTAC CGGATTTAAT CAAATCTGGG AAAAGGATAT GCAGCGGGAT AAGACAGTGC ATAGCGTCTT CAAGCAGAAG TTTCCTGAGG TGGGATTGCT TATGTCACAG ACAGTGGTCG CACCGAACAA AAATGGTGTC AAGGGCACTG TGGTTGAGCT GAAAAATACC TGGGTCGATA ACCCGCAGCA TAAGGCAAGC CTAGTGCGCA GCAAAGGTGT GCACCACAAC ATTCAGACCA GCTCGCTGCA GAAGTCCTGG GATCTGGATG ATGGGAGCCT GATGTCAGAG ATAAAGCAGA CGGTAGGAAC TAGCCCTACC GATGTGGATG AGTGGGGCAA TATTAAAAAG CAAACTCAAA AAGTGACTGA TTACATAAAG GGTCAGGCGA ATACCTATAC CAGTGTGACG GAAACAGGTT TTGTGCCCGA TGTTAATAAT TGGTGGCTCA ATAAGTTTAA CTGGATAAAG ACGAGCCACA ATACTGCGCA GCGCAACTGG GGAGATGACC CGGTTGGCAC GATGGATAAG GCGCAGTGGC AATTGCAAAC GGTCAATACC TGGGATAGCA ATCATAAGTT ACCCACTAAA GTGACTTATA CTGGCAGTAA TAGTAGTTGC AATCGCGTCG AAGAAACCGA ACTAAACAGT TACGGTCTGC CACGGTGGAC CAAAACCACA GGACAAAGCA GTACGTGTAG TGCCATGACT GCAAGGCAAA CGAGCTTTAC CTACACCAAA GACGGCACAA CTCAGGTTGA CGATGGCTAT CTGCCTTACA AGGTTATCAA TGCCAAGGGG CATATCACCA CAACCGAATA CGATATGGGG CTAGGACTCC CCACCAAAGT GATAGCGCCC AACAATATCG TCACTCAAAC AGAGTACGAT GGTATCGGTC GTCCGGTGCA GGTCAAACAG ACAGGCAGTC CAACCCGCTA TTTACGCTAT TTACTCGCCA ATGAGGGTAA TAATCCGCCC CAGGACAACG ACAATATTCC TGTGATGATG ACCCGCACCA GTGGTGCCGG TATGCCTGAA ACGGAGCAGT ATTTTGACGG CCAAGGTCGT TTGCTGCGCA CGGCAACCCA GGGCTTTGAT GGGGGGTATC AGTATCAGGA TAAACATTAT GATGCGCTTG GGCGTTTAAC CCGAGAATCG ACGCCCTATG GTAACGGCAC GGCGGCAGAC TATACCGAGT TCAGTAATTT TGATGCGCTC GATAGACCCG GCAGACGCAC CATTCCTAAT GGGCGCTCCG GTGGGCTGGA GTCCCTATAC TCCTATAACG GGTTAACCAC GGATATCAAT GTCGAAGGAC GCTTGATGTC GCGCACCTAT GGTAGTCAAG GCTGGTTGTA TGAAACCGTG GATGCACAAA ATGGCACCAA CCGCTTTGCC TACGATAGTG CCGGTAGACC GTTAGTTATC CGCGATGCTA ACAATAGTGA TATCAAAGCA ACTTACAACG GTTTTGGCCA TAAAACCCAG GTCATTGACC CTAACCAAGG CACCACCAAT TTTGGTTACA ACAGCGTAGG CGAATTGGAT AAGCAAACCG ATGCCAATGG CGTGGTACAA ACCTACGTAC TCGATGTACT GGGGCGCGTT ACCAGTAAAA CCACCACGGG CGGCAGTGCG CCAGGTACGG CAACTTTTGT GTGGGACACG CCCAAACAAG GCCTACTCAC TTCTGAAACT GAAAACGGCG TCGCTCGCAC TTATGCTTAC ACAACTGCAC TGCAATTGGC GCAAACCACG GTGACCGTTG ATGGTGTAAG TCGTACGGTT AAACATCAAT ACGATGGCTT TTATGGTCGT CCTAAGGCAC TCGAATACCC GAACGGCTTA ACACTCAAAT ATGCCTATAA CGATTACGGT TATCTCGAGC AGACCAGCAA TGCTGCTTCT GGCTATCTCT ATCGTCAAGT CACAGCCATG GATGAGGCAG GCCATACCAC TGGCGCTGAC CTTGCTAACC GGGTGATGTC TGAATCACGC AGTTATTACA GCGAAGGCAC CATGGCAAGT GTTGCGGTGG ATGGCCCGCT TGGGCGTATT CATGCGCACT ACTATGATGG TTATGATGAT TTTATGAATC TCACCAGTGA GCGTGATGGG GTGACAGGCC TAACTAAGAG CTACCGTTAT GACACGCTTA ATCGCCTAAC CGAGTATCAG TTTAGCAATA CCAATCCGAC CTTTAGCGCC ACGGTCAACT ACGGCTATGA CAAGGTGGGT AACTTCCTTA AAAAGACCGA CTACAGTGCC AATAGCAGCA CTGCCTACCG TTATGGCGGC AGCGCCTGTG GCTACAAGCC AAACGCAGTG TGCCAGCTAG ATAAACTCAA TGGCACCACA GTGAGTTTTC AATACGATAA TCGCGGTAAT TTACGTGTGG GTGATGGTCT CACCATGACC TACAATGCCA TGGATAAACC ACTGAGCGTC TCTGGCCGTG GTGCCACCAC GAGCTTTGTC TATGGCAGCG ATAATATGCG CGCCAAGCAA AGCCGCACGG TCGGCAGTGC AACGACAACC ACTTATTATG TCGATAAGTA TTATGAAGCA GACAGTGATG GTAGCTGGCG TGCCTACCTT GATGATATCG CTGTACTCAG TTATACCTCT CAGCGTGGTC ATTTGTTGCA ATTTACTCTC AAGGACCGCC TCGGCAGTGC CACCACCCTA GCCGACCAAA ATGGCAATAT TGTTAGTCAA CGCTACTTTG ACCCCTTTGG ACGAACCGCA TCGACGGGCG GTGGGCATCG TACTGATATA GTGAATAAAA ATACGCTGCA ATCAAAGTTG CAGGATTTGG ATATCACCAA TAAGAACCGC CGCGGTTTTA CCGATCACGA GCATCTGAAT GAACAGCAGT TAATTCATAT GAACGGCCGG GTTTATGACT ACAACATAGG CCGGTTCCTC TCTATAGATC CCTTCATACA AAGTCCGGGG GATAGTCAAT CGATCAACCC GTACAGCTAT TTGATGAACA ACCCGATGGC AGGCACCGAC CCGACGGGGT ACTGTGCTGC GGCGACAGGG TCACACATCA AAGATTGTGG CGATCTGAAG GTTGAGGTGA AGGTTGACGG TAAAACCGTC GGCAGTACGG TCGTTAAAGA CGTCAATCTC AAAAATGGTG CGGATGTCAG TAGCGCAATG AGCAAGGGGG TCGCACAAAT TGGCCAAGCT ATCGCTGATG TGGGAAGCCA GAAGAGTATC GCTAAACAGC AAAGCGTAAA CGAGCAAAGT GCAACGAGTG GAAGGCATAA AGGTGACTTC CGTATAAATG AACACTCTCT ACGTGAAATG ATCGCGGATC CTGGTACATA TGGGGCGGGT CTAGCAAATG TGGCAGGCTC TCTTCATGAC GATGAACTAA GGGATATTCT CGGTGATAGT TATGGTAGCT TCAGGTCTGA ATTGGAAAAT GCTTTTAATA CTGGGTGGGA TAAGGCCATG TTGGCTAAGT CGATCATGGC TCCTGGATTT ATGGCTTCTA GTGCAATGGG CTTTATGCAA GCTCTCGGTG GTTACACTAG AAGTAGCAGT ATTATTCGAC AACAGATACA GTCCGCACGA ACCTATACCA GACCAAATGG TGCTGTTTAC CACGAGGTGT CTCCGACACG ATTGATTGTA TCTGAAAACC ATATAGGTGA TATTTCGAAG GTACTTCAAA GCCATAATGG AACTCTTAAT TTATTCAACA GGAATTTTTG GCAACATGTT TTACCGCATC GTCATATTTA TGATGCTGCA AAGGCGCCAA CACCTAAAGC AAACATGAGA AAAGCATTTG AAAAAGCTGG TGCTGAAAAA ACAACAGTCT GGCAGTGGGA GTAA
|
Protein sequence | MLPLWTPHRH SSFAAFILLL GLSVGAPSEA ALTKPDVEID PILPSIPLPV AIPSLSGSRF SSSVELRWSI DCSVTAVNIQ ESINNQSWTT IYTGLGQADN TAAYATFAVG GDVCSGDWSS KRLLQLPNKT LPGYYYRINA CKGSLCSAYS PSILVGTPSA PSTPSAPASI STPATNTTGA FSVSWAGVSG ATRYELQQRI NGGVWVAKYS GTATSYALSG LASGTYQYQA RACSTACSAW KLSSNTQVSL PVLGSDWKNL SRVTVADAGG SDIEPAEVVD LNAAAVKGQA GVSGGQASYH IPIDLPPGRN GVQPSISLSY NSQGGNGILG VGWSLNAGSS ISRCGATFAQ DGFTRAVTFN ASTDRLCLDG QRLIVASGSY GASNAEYRTE MDSFVKVVQH GNINDSNSSF TVYKPDGSRA TYGANANSRF VPSGLSTALS WKVTQESYSN GANTIDYQYD TSVAGEHLLS QILYTGSLGA LGDRNITFYY QPRTDKRKSY LAGGLTTSTR LLSELKVNGA GGQSVHQYQF DYQLSPASGR HLLRALAQCD ALGHCTPQTQ LTWRDSASTV KADELLIGGQ AVFSGELDIN KVTPHGDANG DGSTDFPGYD SNAEQDMLGQ NGFTHEKACY NDYVSDGWIC VAFDADHDGK VDPFKSINNI LHIQLSASGA ASYVSTGIPF NPNRFPSPDR LMSATDLNGD GDVDLMVFTV VSGKGYWRAY LNTGNASTPY SANSFQLIHE TAIDPKLGSW PARPEVDVTM AGDIDGNGMV DFVVSSLGGS GAANAPVPVL RSFILNNSTP QQWSVQWSSA PTYPFHTGDG FHFFQKLIDI NGDELADIIS WRMVNNDRVI GYELNQGRAT FAPWVAFAGN LHLKERFHSV VVTAQEPMDV IYPQYFDSMQ TADIDLDGIE EILLPGQRVI TGCAYVMFPG GTSGSGIKRT LCGDALYGDL PVNSFNTVPS KPITSSDFDD SIYQYDAIKF VLQVDGRWGL VKQSTPYYGS AHESRLVDTF GDGLVDMLTT YGPRVPGTGQ FNETWIQNPG SSMWGTRYGA YLSRNYGSGN GQTTNDYAAT DYLQAVTDGL GNRSEWRYRP LSTGEGSADQ AKLYTTDHNE VGSGYVHFAS SMYVVQSFKQ SNGQSGENET QYAYKGAMYN LQGRGFTGFN QIWEKDMQRD KTVHSVFKQK FPEVGLLMSQ TVVAPNKNGV KGTVVELKNT WVDNPQHKAS LVRSKGVHHN IQTSSLQKSW DLDDGSLMSE IKQTVGTSPT DVDEWGNIKK QTQKVTDYIK GQANTYTSVT ETGFVPDVNN WWLNKFNWIK TSHNTAQRNW GDDPVGTMDK AQWQLQTVNT WDSNHKLPTK VTYTGSNSSC NRVEETELNS YGLPRWTKTT GQSSTCSAMT ARQTSFTYTK DGTTQVDDGY LPYKVINAKG HITTTEYDMG LGLPTKVIAP NNIVTQTEYD GIGRPVQVKQ TGSPTRYLRY LLANEGNNPP QDNDNIPVMM TRTSGAGMPE TEQYFDGQGR LLRTATQGFD GGYQYQDKHY DALGRLTRES TPYGNGTAAD YTEFSNFDAL DRPGRRTIPN GRSGGLESLY SYNGLTTDIN VEGRLMSRTY GSQGWLYETV DAQNGTNRFA YDSAGRPLVI RDANNSDIKA TYNGFGHKTQ VIDPNQGTTN FGYNSVGELD KQTDANGVVQ TYVLDVLGRV TSKTTTGGSA PGTATFVWDT PKQGLLTSET ENGVARTYAY TTALQLAQTT VTVDGVSRTV KHQYDGFYGR PKALEYPNGL TLKYAYNDYG YLEQTSNAAS GYLYRQVTAM DEAGHTTGAD LANRVMSESR SYYSEGTMAS VAVDGPLGRI HAHYYDGYDD FMNLTSERDG VTGLTKSYRY DTLNRLTEYQ FSNTNPTFSA TVNYGYDKVG NFLKKTDYSA NSSTAYRYGG SACGYKPNAV CQLDKLNGTT VSFQYDNRGN LRVGDGLTMT YNAMDKPLSV SGRGATTSFV YGSDNMRAKQ SRTVGSATTT TYYVDKYYEA DSDGSWRAYL DDIAVLSYTS QRGHLLQFTL KDRLGSATTL ADQNGNIVSQ RYFDPFGRTA STGGGHRTDI VNKNTLQSKL QDLDITNKNR RGFTDHEHLN EQQLIHMNGR VYDYNIGRFL SIDPFIQSPG DSQSINPYSY LMNNPMAGTD PTGYCAAATG SHIKDCGDLK VEVKVDGKTV GSTVVKDVNL KNGADVSSAM SKGVAQIGQA IADVGSQKSI AKQQSVNEQS ATSGRHKGDF RINEHSLREM IADPGTYGAG LANVAGSLHD DELRDILGDS YGSFRSELEN AFNTGWDKAM LAKSIMAPGF MASSAMGFMQ ALGGYTRSSS IIRQQIQSAR TYTRPNGAVY HEVSPTRLIV SENHIGDISK VLQSHNGTLN LFNRNFWQHV LPHRHIYDAA KAPTPKANMR KAFEKAGAEK TTVWQWE
|
| |