Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_1176 |
Symbol | rumA |
ID | 4258294 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 1368095 |
End bp | 1369486 |
Gene Length | 1392 bp |
Protein Length | 463 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638121797 |
Product | 23S rRNA 5-methyluridine methyltransferase |
Protein accession | YP_737232 |
Protein GI | 114046682 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0393959 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0809579 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGCGGTC TTTACCAGTT TTTTATTGAT TTAGAGGCCG AAATGGCACA ATTTTTTAAA GCAAAACCAA ATAGTTCCAA GCAATTGTCC GCGAAGCAGT CCTTTAGCGT GCACCAGCTC GATCATCTAG GGGCAGGTAT AGCACAACAT CAGGGAAAAG TCGTATTTAT CCCCGGCGCC TTGCCCAGCG AAACCGTGCA AGCGCAGCTG ACCGAACAAA AGAAAAACTA TGCCCGAGCC AAGCTAATTA AAGTCGAGAC GCCGAGCGCT GAGCGAGTCA CGCCGCTATG CCCACATTAC CAAAGCTGTG GCGGCTGCGA TTTACAGCAT ATGTCATTAG CTGGGCAACG CGAGCATAAG TCTGCTGCCT TGGTTGATAT TATGGCTAAA TTTGCTGGCG CCGAAGGCAA CTCAGTGCCC GCCTTGACGG GTGAGGGGTG GCACTATCGT CGCCGTGCCC GCCTTGCGAC TCTATTTGAT AAAAATACCA AGCAGTTAAG CTTAGGGTTT CGTGCCTCGA GCAGCAACCA AGTCGTGCCT ATTGATAGCT GTTTAGTCTT GGCGAAACCC TTATCGGATT TAATTGCCCC GTTTGCTAAG TTGCTTAATC AATTGGCGGC CAAATCGAGT CTTGGGCATT TAGAGTTGAT TGACGCCGAC AACGGCCATT TTGCGGTAAT TCGGATCACT AAATCCTTAA ATGATAAGGA CATGGCTAAG CTTGCGCAGT TTGCCGAGCA GCATCAAATC CATATTTGTT TACAAGACAA CAACGGCGAG TTCCATGGGG TGAATGGCAC GCTGTTATTG CCCGTTTACC AGTTGCTCGA TGATAAAGCC GATGCAACGC CTGTGAGCCT CACTTTTACC CCGGGTAACT TTGTGCAAGT GAATGCGCAA ATTAATAAGG CCATGGTGGC GCAGGCGTTA GATTGGTTAG CACCACAGCC GGGTGAGCGT ATTCTCGATC TCTTCTGTGG AATGGGGAAC TTCAGTTTGC CCCTAGCTAA ACTGGGCGCC GAAGTGATTG GGGTTGAAGG GGTGCCAGAA ATGGTTAGCC AAGCCCGTGA AAACGCGGCG GCAAATGGCT TAAGCAATTT AACCTTTTAC CATGGCGATT TAAGTGCCGA TTTATCCTGC GAGCCTTGGA TGGGCAAGAT TGATAAGTTG CTACTCGATC CTGCCCGCGC GGGTGCGTTC GAGAGTTTGC AATGGCTTAA GAAGATGAAA CCTCGCCAAG TGGTGTATGT GTCGTGTAAT CCGGCGAGCT TAGCCCGCGA CAGTGCGGTG TTGCTTGAAC GTGGTTACAA GTTACAAAAG TTAGGCTTAA TCGATATGTT CCCGCAGACA CATCATATCG AAGCCATGGC GTTGTTTGAG CTTGCAAAAT AA
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Protein sequence | MGGLYQFFID LEAEMAQFFK AKPNSSKQLS AKQSFSVHQL DHLGAGIAQH QGKVVFIPGA LPSETVQAQL TEQKKNYARA KLIKVETPSA ERVTPLCPHY QSCGGCDLQH MSLAGQREHK SAALVDIMAK FAGAEGNSVP ALTGEGWHYR RRARLATLFD KNTKQLSLGF RASSSNQVVP IDSCLVLAKP LSDLIAPFAK LLNQLAAKSS LGHLELIDAD NGHFAVIRIT KSLNDKDMAK LAQFAEQHQI HICLQDNNGE FHGVNGTLLL PVYQLLDDKA DATPVSLTFT PGNFVQVNAQ INKAMVAQAL DWLAPQPGER ILDLFCGMGN FSLPLAKLGA EVIGVEGVPE MVSQARENAA ANGLSNLTFY HGDLSADLSC EPWMGKIDKL LLDPARAGAF ESLQWLKKMK PRQVVYVSCN PASLARDSAV LLERGYKLQK LGLIDMFPQT HHIEAMALFE LAK
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