Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_1172 |
Symbol | |
ID | 4258290 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 1363419 |
End bp | 1364318 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638121793 |
Product | LysR family transcriptional regulator |
Protein accession | YP_737228 |
Protein GI | 114046678 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.026682 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTGATG ATGTAGGCGG CGAGCTGCAA TTAATTTATC TGTTTGTGCA TTTAGTGAAT GCGGGGAGTT TTTCTCTGGC GGCTAAAGAA CTCGATATGC CCATCGCCAC CGTGAGCCGT AAGCTGGCCA AGCTTGAGGA AAAGCTCGAT AAGCAGTTGT TTATGCGGAG CACCCGTAAA CTGCGGTTAA CCGAAGAAGG CCTAGCATTA TTCCAACGTT ATCAGAGCGT CATTGCCCAA TTTGATGAAC TCAGTGGCAT TGGTAGTGAT AAGCCCGAAG GGACATTGCG GATTGCGGCG CCGATTTCGA TTATTTCTAT CATCTTTATC CGCGCATTGA ACGAATTTGG GCGTTTATAT CCCGATATTC GCTTACATAT CTCACAAAGT AATGAGTTAG TGGATTTAAT CGATAAAGGG ATCGATGTGG CGATTGTGGG CGGTGCGCAG CCCGATTCCT CTTGGGTGTC GAGCACCTTA GGTGAACTCG ATTATCGCCT GTTTGCCACG CCGGAATATT TAGCCACTGC GCCAAAGTTA ACCCATCCCG ATGACCTCGA AGCCCACCAG TTAATTAAGG TTTGGCCACT GTTTAATTGG CATTTAAAAC ACCCCAATGG CGAGTCGTTC TATTTTAATG GCCCGACAAA ACTCACGCTT ACGGATCTTC ACGGTGCGAT TCAGGCGACA CTCGACCACG GCGGCATTCT CTATGGCCCA GAATTATTTG TAAAACAACA GATTAAAGAT GGTCAGTTAA AAGTGTTGCT GCCGGAATGG ATAGGTGAGC AGCGCAGAAT ATCGATTCTG TATCACCAAC GGAGTCAGCA GCCGCAGAAG GTCAGGGTGT TTATCGAGTT TATGCAGTCT AAGGCGCCCG AGCTGTTCTC GATGGCGTAA
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Protein sequence | MADDVGGELQ LIYLFVHLVN AGSFSLAAKE LDMPIATVSR KLAKLEEKLD KQLFMRSTRK LRLTEEGLAL FQRYQSVIAQ FDELSGIGSD KPEGTLRIAA PISIISIIFI RALNEFGRLY PDIRLHISQS NELVDLIDKG IDVAIVGGAQ PDSSWVSSTL GELDYRLFAT PEYLATAPKL THPDDLEAHQ LIKVWPLFNW HLKHPNGESF YFNGPTKLTL TDLHGAIQAT LDHGGILYGP ELFVKQQIKD GQLKVLLPEW IGEQRRISIL YHQRSQQPQK VRVFIEFMQS KAPELFSMA
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