| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1170 |
|---|
| Symbol | |
|---|
| ID | 4258288 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 1360394 |
|---|
| End bp | 1362052 |
|---|
| Gene Length | 1659 bp |
|---|
| Protein Length | 552 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638121791 |
|---|
| Product | recombination and repair protein |
|---|
| Protein accession | YP_737226 |
|---|
| Protein GI | 114046676 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0497] ATPase involved in DNA repair |
|---|
| TIGRFAM ID | [TIGR00634] DNA repair protein RecN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0260908 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTTGCC AACTCAGCAT CAACAATTTC GCTATCGTAC GTTTCCTTGA ACTGGACTTT
CGCCCCGGAA TGACCAGCAT TACCGGTGAG ACTGGCGCGG GAAAATCCAT CGCCATTGAC
GCACTAGGCT TATGCCTAGG TAACCGTGCC GATGCCAGCA GTGTTCGCCC TGGCGCGAGC
AAAACCGAAG TCAGTGCCCG ATTTTCGCTC GAGGATGTGC CTCTGGCAAA ACGCTGGCTT
GAAGATAACG ATCTCGAACT CGATGATGAG TGCATTCTGC GTCGAACCAT TGGCAGTGAC
GGCCGCTCAC GCGCCTATAT CAATGGCAAT CCCGTCCCTT TGACTCAGTT AAAATTACTG
GGGCAATTGC TTGTAGGGAT CCATGGCCAG CACGCCCACC ATGCCATGTT AAAGAGTGAA
CATCAGCTCA CCTTACTCGA TAGCTACGCC AATCACAGAC TACTGATAGA CACTGTCGCG
GCAAGCTATC AGCGCTGTAA ACAAATTGAA GCCGAACTCA AACAATTAGA AGCCTCCCAG
CAGGAACGTA TCGCCCGTAA ACAGCTGGTG CAATATCAAG TTGAAGAGTT AGATGAGTTT
GATCTCAAGG TCGGTGAATT TGAAGAGATT GAACAGGAAC ACAAACGCCT GGCAAATGGC
ACCGAATTAG TCGATAGCTG CCAAGCCAGC CTGTTTTTGC TCACGGATGG TGAAGAGAGC
AATATCGAGT CATTGCTGAA CAAAGCAGTC GGCCTTGCCG AAAATCTGCA AAGTTATGAC
CCCGCATTAA CCAATGTCAG CACTATGCTA AACGAGGCGC TTATTCAAGT GCAAGAGAGC
GCCGGCGAAT TGCAGCACTA CCTGAGTAAA CTTGAGCTCG ATCCCGCGCA TTTTGCCTAT
TTAGAGGAAA GGCTCTCTAA AGCCATGCAA CTGGCCCGTA AGCACCATGT CAGCCCTGAT
AAATTAGCCG AGCATCATCT CGCCCTCAGA GCCGAACTCA CGACCCTAGA TCATGATGAA
AATAAGCTAG AAGATATTCA ACGCCAAGTG GAAGCCAGTA AAGTGGCCTA CCTCGCTAAC
GCGCAAAAGC TAAGTCAAAG CCGCGCCCGT TATGCGAAAG AGCTGGACAA GCTGGTGACT
CAATCCATCC ATGAGCTCAA CATGCCTAAG GGAAAGTTCA CCATTGAAGT GAATTTCAAT
CCAGAAATCA TGTCGATGAA CGGCAGCGAT AACATAGAGT TTATGGTTAC CACCAACCCA
GGCCAGCCAT TACAACCTAT ATCAAGGGTT GCCTCAGGCG GCGAATTGTC ACGTATTGGC
TTAGGTATCC AAGTCATCAC AGCAAAAAAG GTTGCCACAC CTACACTCAT TTTCGACGAG
GTGGATGTTG GGATCTCTGG CCCCACAGCA GCCGTCGTTG GACGCATGCT GCGTAGCCTT
GGCGAATCGA CCCAAGTTCT GTGTGTGACA CACTTACCTC AAGTTGCTGG TAACGGTCAT
CAACATATGT TTGTGAATAA ATTCAACAAG GCAGGAAGCA CAGAAACCAC AATGACGCCT
TTAGATAGGG AACAACGTAT CCAAGAGCTC GCCAGATTAC TCGGCGGCGA CACGATTACC
ACCAACACCT TAGCCAATGC CAGGGAGTTA TTACAGTAG
|
|---|
| Protein sequence | MLCQLSINNF AIVRFLELDF RPGMTSITGE TGAGKSIAID ALGLCLGNRA DASSVRPGAS
KTEVSARFSL EDVPLAKRWL EDNDLELDDE CILRRTIGSD GRSRAYINGN PVPLTQLKLL
GQLLVGIHGQ HAHHAMLKSE HQLTLLDSYA NHRLLIDTVA ASYQRCKQIE AELKQLEASQ
QERIARKQLV QYQVEELDEF DLKVGEFEEI EQEHKRLANG TELVDSCQAS LFLLTDGEES
NIESLLNKAV GLAENLQSYD PALTNVSTML NEALIQVQES AGELQHYLSK LELDPAHFAY
LEERLSKAMQ LARKHHVSPD KLAEHHLALR AELTTLDHDE NKLEDIQRQV EASKVAYLAN
AQKLSQSRAR YAKELDKLVT QSIHELNMPK GKFTIEVNFN PEIMSMNGSD NIEFMVTTNP
GQPLQPISRV ASGGELSRIG LGIQVITAKK VATPTLIFDE VDVGISGPTA AVVGRMLRSL
GESTQVLCVT HLPQVAGNGH QHMFVNKFNK AGSTETTMTP LDREQRIQEL ARLLGGDTIT
TNTLANAREL LQ
|
|---|
| |