| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1165 |
|---|
| Symbol | ribH |
|---|
| ID | 4258283 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 1356625 |
|---|
| End bp | 1357101 |
|---|
| Gene Length | 477 bp |
|---|
| Protein Length | 158 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638121786 |
|---|
| Product | 6,7-dimethyl-8-ribityllumazine synthase |
|---|
| Protein accession | YP_737221 |
|---|
| Protein GI | 114046671 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0054] Riboflavin synthase beta-chain |
|---|
| TIGRFAM ID | [TIGR00114] 6,7-dimethyl-8-ribityllumazine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000279173 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.121232 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGTAG TTCAAGGTAA TATCGAAGCG AAGAATGCCA AAGTTGCGAT TGTAATTTCG
CGTTTTAACA GCTTTTTAGT TGAGAGCCTG CTTGAAGGTG CACTTGACAC GCTGAAACGT
TTTGGCCAAG TCAGTGACGA AAACATCACT GTCGTCCGTG TACCTGGTGC GGTTGAGTTA
CCGCTGGCTG CACGTCGTGT TGCCGCAAGT GGTAAGTTTG ACGGTATCAT CGCACTCGGT
GCTGTGATCC GTGGTGGTAC CCCTCATTTC GATTTTGTTG CAGGTGAATG TAACAAAGGT
CTAGCTCAAA TCGCATTAGA GTTCGATCTG CCCGTTGCTT TCGGTGTATT GACTACAGAT
ACCATTGAAC AAGCCATTGA GCGTTCAGGT ACTAAAGCGG GTAACAAGGG CGGCGAAGCT
GCACTTAGCT TGCTTGAAAT GGTCAACGTT CTGCAGCAGC TAGAACAACA GTTGTAA
|
|---|
| Protein sequence | MNVVQGNIEA KNAKVAIVIS RFNSFLVESL LEGALDTLKR FGQVSDENIT VVRVPGAVEL
PLAARRVAAS GKFDGIIALG AVIRGGTPHF DFVAGECNKG LAQIALEFDL PVAFGVLTTD
TIEQAIERSG TKAGNKGGEA ALSLLEMVNV LQQLEQQL
|
|---|
| |