| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1146 |
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| Symbol | |
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| ID | 4257791 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 1328661 |
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| End bp | 1331810 |
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| Gene Length | 3150 bp |
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| Protein Length | 1049 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638121767 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_737202 |
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| Protein GI | 114046652 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.204778 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.908583 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGTCGC AGTTTTTTAT TAAAAGACCG ATATTTGCAG CCGTTCTCTC GCTGCTGTTT
TTTATCACAG GGGCGATTGC CGTCTGGCAA TTACCCATTA CCGAATACCC AGAAGTGGTG
CCTCCGACGG TCGTGGTAAC CGCCAACTAC CCTGGCGCTA ACCCTAAAGT TATTGCTGAA
ACGGTTGCTT CGCCCTTAGA GCAGGAAATC AACGGCGTCG AAGACATGCT GTATATGTCA
TCGCAGGCGA CGTCCGATGG ACGCATGACC TTGACCATCA CCTTTGCCAT TGGCACCGAT
GTGGACAGGG CGCAAACCCA AGTACAGAGC CGGGTAGACC GAGCTATGCC ACGTTTGCCG
CAGGAGGTTC AACGCCTCGG GATTGTGACC GAAAAATCAT CGCCAGACTT AACCATGGTG
GTGCATTTAC TGTCGCCGGA TAACCGTTAT GACATGCTGT ATTTGTCTAA CTACGCGGCG
CTCAACGTAA AAGATGAGTT AGCACGCATC AAAGGTGTGG GCGCGGTGCG TTTATTCGGT
GCGGGCGAAT ATAGTCTGCG GATCTGGCTT GACCCCAATA AAGTCTCGGC GCTTGGCATG
TCGCCAGCTG AAATTATCGC CGCCGTACGT GAGCAAAATC AACAAGCGGC AGCGGGCAGT
TTAGGGGCGC AGCCTAGTGG TAATGCCGAC TTCCAACTCT TGATTAACGT TAAGGGTCGT
CTGACTGAAC TGTCAGAATT CGAAGACATT ATTATCAAGG TCGGTCAAAA CGGTGAGGTG
ATCCGTCTTA AGGATGTGGC ACGCGTCGAG CTCGGTGCAA CGAGCTATGC GCTGCGTTCA
TTGCTGGATA ACAAGGACGC GGTAGCTATT CCAGTGTTCC AAGCATCAGG CTCGAATGCG
ATTCAAATCT CCGACGATGT GCGCGCCGAA ATGGCAAGAC TGGCTAAGTC TTTCCCCGAA
GGGCTGCAAT ACGAGATTGT CTACGACCCG ACTGTGTTTG TGCGTGGCTC TATCCATGCG
GTGGTGAAAA CCCTGCTCGA AGCCGTGCTC TTAGTGGTGC TCGTGGTGGT GCTATTCCTG
CAGACTTGGC GCGCCTCGAT TATTCCGCTG GTGGCCGTGC CTGTGTCTTT GGTGGGTACC
TTCGCCTTTA TGCACTTGAT GGGATTCTCG CTCAATGCGT TGTCGCTGTT TGGTCTGGTG
CTGGCCATCG GGATTGTGGT CGACGATGCC ATCGTGGTGG TAGAAAACGT GGAGCGAAAT
ATCGCTTCGG GTTTAAGCCC CATTGCCGCA ACACAAAAAG CCATGAAGGA AGTGACTGGG
CCGATTGTGG CAACCACTTT AGTGTTGGCC GCAGTGTTTA TTCCGACCGC CTTTATGAGC
GGATTAACCG GGCAGTTTTA TAAGCAGTTC GCGCTGACTA TCACGATTTC GACCTTTATT
TCGGCCATTA ACTCGCTCAC CTTGAGCCCA GCGTTATCGG CGCTGTTACT CAAGGGCCAT
GACGCGCCTA AAGATGCGCT TACTCGGTTA ATGGATAAGC TGTTTGGTGG TTGGTTATTT
ACGCCATTCA ATCGCTTATT CAACCGTGCA TCAGAGGGTT ATGGCTATTT AGTGCGTAAG
GTGATCCGTT TTGGCGGCAT TATCGGACTG GTGTATCTGG GGATGGTTGC GCTTACGGGC
GTGCAATTTG TAAATACCCC AACGGGTTAT GTGCCAGGAC AGGATAAGCA GTATTTAGTG
GCATTTGCCC AATTACCGGA TGCGGCCTCA CTCGAGCGTA CCGATGCGGT GATCAAGAAA
ATGTCCGACA TCGCCTTAAA TCACCCCGGT GTGGCGCACT CTATTGCCTT CCCCGGTCTG
AGTATTAACG GTTTTACCAA TAGTCCTAAC TCGGGCGTGG TGTTTGTTGC CCTAGATGAT
TTTGAATTAC GTAAGCGTCC TGAACTGTCG GCGAATGCGA TTGCCGGCCA ATTAAATCAG
CAATTTGCTG GTATTCAGGA TGCGTTTATT GCCATCTTCC CGCCGCCACC TGTGCAAGGC
CTCGGCACTA TTGGTGGGTT CCGTCTGCAA ATTCAAGACA GAGCCAACCT TGGTTATGAG
GCCTTGTATC AGGTGACCCA ACAAGTAATG TACAAGGCGT GGGCCGATCC ACAATTAGCG
GGGATTTTCT CTAGCTATCA AGTGAACGTG CCACAACTTG AACTGGATAT CGATCGAACT
AAAGCGAAAC AGCAGGCAGT GTCGCTCGAT CAAATTTTCC AGACATTACA AACCTATATG
GGCTCTACCT ATGTCAACGA CTTCAATCGT TTCGGTCGAA CCTATCAGGT GAATATGCAG
GCCGACGAAG CCTTCCGTCA AAGCCCGCAG CAGATCAGTC AGTTAAAAGT GCCTAATGTT
AATGGCGATA TGATCCCGCT TGGCTCCTTT ATCAATGTGA GTCAGAGCGC GGGGCCAGAT
CGTGTAATGC ACTATAACGG TTTCACCACG GCTGAGATTA ACGGTGGCCC TGCACCCGGT
GTGAGTTCGG GGCAAGCGCA GGCAGCGATT GAGAAAATCC TCGCCGAGAC TTTGCCGATA
GGTATGACCT ACGAATGGAC TGAGCTGACT TATCAGCAGA TCCTCGCCGG TAACACAGGC
TTGTTAGTGT TCCCTCTGGT GATCCTGCTG GTGTTTATGG TGCTCGCGGC GCAGTACGAG
AGTTTGAGTT TACCATTGGC GATTATCTTA ATTATCCCAA TGACCTTACT CTCGGCGCTC
AGTGGTGTGC TTATCTATGG CGGTGATAAT AATATTTTCA CCCAGATTGG TCTTATCGTC
CTCGTGGGCT TAGCGACCAA GAACGCGATT CTGATAGTCG AATTTGCCAA GGAAAAACAA
GACCATGGTA TGGAGGTCAT GGAGTCGATT CTTGAGGCGG CGCGCTTACG CTTACGTCCC
ATCTTGATGA CCTCTATCGC CTTTATCATG GGGGTGGTGC CCATGGTGTT CTCAACGGGC
GCGGGCGCCG AGATGCGTCA GGCCATGGGG GTAGCGGTAT TTGCCGGTAT GATAGGGGTG
ACACTGTTTG GGTTAATCCT GACACCGCTG TTTTACTACG CGTTAGCTAA ACGCGGTCGC
CGCAAAGCGG AAGCGCTAAC GGCTCAATAG
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| Protein sequence | MLSQFFIKRP IFAAVLSLLF FITGAIAVWQ LPITEYPEVV PPTVVVTANY PGANPKVIAE
TVASPLEQEI NGVEDMLYMS SQATSDGRMT LTITFAIGTD VDRAQTQVQS RVDRAMPRLP
QEVQRLGIVT EKSSPDLTMV VHLLSPDNRY DMLYLSNYAA LNVKDELARI KGVGAVRLFG
AGEYSLRIWL DPNKVSALGM SPAEIIAAVR EQNQQAAAGS LGAQPSGNAD FQLLINVKGR
LTELSEFEDI IIKVGQNGEV IRLKDVARVE LGATSYALRS LLDNKDAVAI PVFQASGSNA
IQISDDVRAE MARLAKSFPE GLQYEIVYDP TVFVRGSIHA VVKTLLEAVL LVVLVVVLFL
QTWRASIIPL VAVPVSLVGT FAFMHLMGFS LNALSLFGLV LAIGIVVDDA IVVVENVERN
IASGLSPIAA TQKAMKEVTG PIVATTLVLA AVFIPTAFMS GLTGQFYKQF ALTITISTFI
SAINSLTLSP ALSALLLKGH DAPKDALTRL MDKLFGGWLF TPFNRLFNRA SEGYGYLVRK
VIRFGGIIGL VYLGMVALTG VQFVNTPTGY VPGQDKQYLV AFAQLPDAAS LERTDAVIKK
MSDIALNHPG VAHSIAFPGL SINGFTNSPN SGVVFVALDD FELRKRPELS ANAIAGQLNQ
QFAGIQDAFI AIFPPPPVQG LGTIGGFRLQ IQDRANLGYE ALYQVTQQVM YKAWADPQLA
GIFSSYQVNV PQLELDIDRT KAKQQAVSLD QIFQTLQTYM GSTYVNDFNR FGRTYQVNMQ
ADEAFRQSPQ QISQLKVPNV NGDMIPLGSF INVSQSAGPD RVMHYNGFTT AEINGGPAPG
VSSGQAQAAI EKILAETLPI GMTYEWTELT YQQILAGNTG LLVFPLVILL VFMVLAAQYE
SLSLPLAIIL IIPMTLLSAL SGVLIYGGDN NIFTQIGLIV LVGLATKNAI LIVEFAKEKQ
DHGMEVMESI LEAARLRLRP ILMTSIAFIM GVVPMVFSTG AGAEMRQAMG VAVFAGMIGV
TLFGLILTPL FYYALAKRGR RKAEALTAQ
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