Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_1142 |
Symbol | |
ID | 4256742 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 1324889 |
End bp | 1325707 |
Gene Length | 819 bp |
Protein Length | 272 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638121763 |
Product | extracellular solute-binding protein |
Protein accession | YP_737198 |
Protein GI | 114046648 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000284369 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTGTTT GCAGCCCAAC AAGGAATGAA TTTCAGCGAG TAATAAATAA CCCGCTGACG TTGTTGACTG CGGCTTGCCT ATTTTTATTC TCTGCCACAA CCCACTCCTC CTTTGCCCAA GAAAGCCAAA GTAACCCACA AGCCGTAGGA CATAGCATCA CCTTAGCCGC CGAAGACAGC TGGCCGCCGT TCGCCAATCA GTTTGGCCAA GGGATCTCCC ATCGCCTTAT CGCGGCGGCA TTCAAGCAAT CTCAAGTGGA AGTCAACAGC CTAGTCGTGC CCTATAGCCG CGCCCTTATG ATGGCCGAGA AAGGTGCCGT CGATGGGGTA TTTAACGTGA CCCGCGAGGC GAGTACCGAA CAACGTTTTG TGTTTGGTAA CACGCCGCTA TTTGTGGCGA AAGCCTCTTT TTATCAACGC AAACAACGCC CGCTCATCGC CGCCAATAAA TGGGAAATTC CCAAAGGCAG CATAGTCGGG GTCATAAAAA GTTATGAGTA TGGCGATGAG TTTCCCGAAC TGGTGAAACA GCGCCAACTG AATGTCATCA CGGTTGCCAA CCAACAGCAA CTGATTAATC TGTTGATGAT CGGCCGAGTC GATGCGGCGG TCATGTTCGA CTTAGTCGCA CAGGAAAACC TGCAAAAAAT GGGCGTCAGT GACGATGTGA TCCCCGCCTT TAATAACCAT AGCAGCGAGA TTTATCTGGC CTTTTCGAAG GAAAACCCCA AAGCCGCACA ACTCGCTAAA GAGCTGGATC TGGGCTTAAC CCAGTTAAAA GCCAATGGAC AGTATCAACA ACTGCTTAGC ACTAAGTAA
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Protein sequence | MRVCSPTRNE FQRVINNPLT LLTAACLFLF SATTHSSFAQ ESQSNPQAVG HSITLAAEDS WPPFANQFGQ GISHRLIAAA FKQSQVEVNS LVVPYSRALM MAEKGAVDGV FNVTREASTE QRFVFGNTPL FVAKASFYQR KQRPLIAANK WEIPKGSIVG VIKSYEYGDE FPELVKQRQL NVITVANQQQ LINLLMIGRV DAAVMFDLVA QENLQKMGVS DDVIPAFNNH SSEIYLAFSK ENPKAAQLAK ELDLGLTQLK ANGQYQQLLS TK
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