| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1124 |
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| Symbol | |
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| ID | 4258766 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 1301496 |
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| End bp | 1308701 |
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| Gene Length | 7206 bp |
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| Protein Length | 2401 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638121745 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_737180 |
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| Protein GI | 114046630 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGCCTC TGTGGACACC GCACCGTCAC TCATCTTTTG CCGCTTTTAT ATTGCTATTG
GGGTTGTCTG TGGGGGCACC GAGTGAGGCG GCGCTGACAA AACCTGATGT TGAAATTGAC
CCTATATTGC CAAGTATTCC TTTACCTGTA GCAATACCTT CTCTTTCCGG TAGTCGTTTT
TCGTCAAGTG TCGAATTACG CTGGAGTATT GATTGCTCTG TCACTGCCGT TAATATCCAA
GAATCCATCA ATAATCAGTC TTGGACAACA ATCTATACTG GATTAGGTCA AGCGGATAAT
ACAGCTGCCT ATGCTACGTT TGCTGTTGGG GGGGATGTTT GCAGTGGTGA TTGGTCAAGC
AAACGATTAT TGCAACTCCC TAATAAGACC CTCCCAGGTT ATTACTACCG CATCAATGCT
TGCAAAGGTT CATTGTGTAG CGCTTATAGC CCTTCTATTC TTGTTGGCAC TCCTTCTGCG
CCTTCTACCC CCTCGGCTCC AGCCTCTATC TCGACTCCTG CAACCAATAC AACAGGGGCG
TTTAGCGTTT CTTGGGCTGG CGTCAGTGGC GCTACGCGTT ATGAGTTACA GCAACGCATT
AATGGTGGCG TATGGGTTGC GAAATATTCT GGTACGGCCA CCAGTTATGC ATTGTCGGGA
CTCGCTTCGG GCACCTATCA ATATCAAGCG CGGGCTTGCT CAACGGCGTG CAGTGCCTGG
AAGTTATCAA GTAATACTCA GGTCAGTTTG CCCGTGCTTG GTAGTGATTG GAAAAACCTA
TCGCGGGTGA CGGTTGCCGA TGCGGGCGGT AGTGATATCG AGCCCGCTGA AGTTGTTGAT
TTAAATGCAG CAGCGGTTAA GGGGCAAGCT GGCGTCTCGG GTGGCCAAGC AAGTTATCAC
ATTCCTATCG ATTTACCGCC AGGACGTAAT GGTGTTCAGC CTTCTATATC GCTTAGCTAT
AACTCCCAAG GGGGTAATGG CATTTTAGGT GTGGGTTGGT CACTCAATGC TGGCTCAAGC
ATTAGTCGCT GTGGTGCAAC CTTTGCGCAG GATGGTTTTA CCCGTGCGGT CACCTTTAAT
GCCTCAACCG ATAGGTTGTG TCTTGACGGG CAGCGTTTAA TTGTTGCGAG TGGCAGTTAT
GGGGCAAGCA ATGCTGAATA TCGCACTGAG ATGGATTCCT TCGTTAAAGT GGTACAGCAC
GGCAACATTA ATGACAGTAA CAGCAGTTTT ACCGTCTATA AACCTGATGG TAGTCGAGCC
ACCTATGGCG CAAACGCCAA TAGTCGCTTT GTGCCAAGCG GGTTAAGCAC AGCACTCAGT
TGGAAGGTGA CCCAGGAGTC TTATTCCAAT GGTGCTAATA CCATCGATTA TCAATACGAT
ACGAGCGTGG CGGGTGAGCA TCTTCTTAGC CAGATTTTAT ATACAGGTAG TTTGGGCGCA
TTAGGTGATA GGAATATCAC ATTTTATTAT CAGCCTCGGA CTGACAAGCG TAAAAGTTAT
CTGGCCGGAG GGCTAACAAC CAGTACTCGT TTGTTATCAG AGCTTAAGGT CAATGGTGCA
GGAGGACAAT CAGTTCATCA ATATCAGTTT GATTATCAAC TGAGTCCGGC TAGCGGGCGC
CACTTATTAC GAGCGCTAGC GCAGTGTGAT GCATTAGGAC ACTGCACACC GCAAACTCAA
CTGACTTGGC GCGATAGCGC ATCGACAGTT AAGGCCGATG AACTCCTTAT TGGTGGGCAA
GCGGTATTTT CAGGTGAGTT GGACATTAAT AAAGTGACCC CGCATGGCGA TGCTAATGGT
GATGGTTCCA CCGATTTCCC TGGATATGAC TCAAATGCAG AGCAGGACAT GCTGGGTCAA
AATGGGTTTA CTCATGAGAA AGCTTGCTAT AACGATTATG TCTCCGATGG TTGGATTTGT
GTTGCATTCG ATGCGGACCA TGACGGTAAA GTCGACCCCT TTAAATCCAT CAACAACATC
TTACATATTC AATTATCTGC ATCAGGGGCA GCTTCGTATG TGTCAACGGG CATCCCTTTT
AATCCGAATC GCTTTCCAAG CCCTGATAGG CTAATGAGCG CGACTGACCT CAACGGAGAT
GGGGATGTTG ACCTGATGGT CTTTACTGTT GTGAGCGGTA AAGGCTATTG GCGGGCTTAT
TTAAATACGG GTAACGCATC AACGCCTTAT TCCGCGAATT CCTTTCAATT AATCCATGAG
ACCGCAATAG ACCCTAAACT GGGAAGTTGG CCAGCAAGAC CTGAAGTTGA TGTCACTATG
GCGGGTGATA TTGATGGCAA TGGGATGGTG GATTTTGTGG TGTCAAGCTT GGGCGGCAGT
GGTGCGGCGA ATGCCCCTGT CCCCGTGTTG CGAAGTTTCA TCTTAAATAA CAGCACACCG
CAACAATGGA GTGTGCAATG GTCAAGTGCT CCAACTTATC CATTCCATAC TGGGGATGGT
TTTCATTTTT TCCAAAAGCT GATTGATATT AATGGTGATG AATTAGCGGA CATTATTTCC
TGGCGCATGG TAAATAATGA CCGCGTGATT GGTTATGAAC TTAATCAGGG ACGCGCCACG
TTTGCCCCTT GGGTGGCTTT TGCGGGCAAT CTACATTTGA AAGAGCGTTT CCATTCGGTG
GTGGTCACGG CGCAAGAGCC TATGGATGTA ATTTACCCGC AATACTTTGA CAGCATGCAA
ACGGCTGACA TCGATTTAGA TGGTATTGAG GAGATATTAC TTCCAGGTCA GAGGGTGATT
ACAGGTTGTG CCTATGTGAT GTTTCCCGGT GGGACTTCGG GCAGCGGCAT CAAAAGGACA
CTCTGTGGTG ATGCGCTCTA TGGGGATTTG CCTGTAAACA GTTTTAATAC GGTTCCCAGC
AAACCGATTA CCAGTTCAGA TTTTGATGAT TCGATTTATC AATACGATGC AATTAAATTC
GTGTTGCAAG TCGATGGCCG CTGGGGCTTG GTAAAGCAAT CCACCCCATA TTACGGCTCT
GCCCATGAAT CCCGCTTGGT GGATACATTT GGGGATGGTC TGGTTGATAT GCTCACAACC
TATGGGCCAC GCGTGCCTGG CACGGGACAG TTTAACGAAA CGTGGATACA AAACCCGGGT
TCAAGCATGT GGGGCACGCG CTATGGCGCT TACCTCAGCC GTAACTATGG CTCTGGTAAC
GGACAAACTA CCAACGATTA TGCTGCTACA GATTACCTGC AAGCCGTTAC TGACGGTCTA
GGTAATCGTA GCGAATGGCG TTATCGCCCA CTGTCAACCG GAGAAGGCAG TGCTGACCAA
GCTAAGCTTT ATACTACAGA CCATAATGAG GTTGGTTCCG GTTATGTCCA TTTCGCCTCC
AGTATGTATG TGGTGCAGTC CTTTAAGCAA AGCAACGGAC AGAGTGGCGA AAATGAAACC
CAATATGCCT ATAAAGGCGC GATGTACAAC CTACAAGGAC GTGGCTTTAC CGGATTTAAT
CAAATCTGGG AAAAGGATAT GCAGCGGGAT AAGACAGTGC ATAGCGTCTT CAAGCAGAAG
TTTCCTGAGG TGGGATTGCT TATGTCACAG ACAGTGGTCG CACCGAACAA AAATGGTGTC
AAGGGCACTG TGGTTGAGCT GAAAAATACC TGGGTCGATA ACCCGCAGCA TAAGGCAAGC
CTAGTGCGCA GCAAAGGTGT GCACCACAAC ATTCAGACCA GCTCGCTGCA GAAGTCCTGG
GATCTGGATG ATGGGAGCCT GATGTCAGAG ATAAAGCAGA CGGTAGGAAC TAGCCCTACC
GATGTGGATG AGTGGGGCAA TATTAAAAAG CAAACTCAAA AAGTGACTGA TTACATAAAG
GGTCAGGCGA ATACCTATAC CAGTGTGACG GAAACAGGTT TTGTGCCCGA TGTTAATAAT
TGGTGGCTCA ATAAGTTTAA CTGGATAAAG ACGAGCCACA ATACTGCGCA GCGCAACTGG
GGAGATGACC CGGTTGGCAC GATGGATAAG GCGCAGTGGC AATTGCAAAC GGTCAATACC
TGGGATAGCA ATCATAAGTT ACCCACTAAA GTGACTTATA CTGGCAGTAA TAGTAGTTGC
AATCGCGTCG AAGAAACCGA ACTAAACAGT TACGGTCTGC CACGGTGGAC CAAAACCACA
GGACAAAGCA GTACGTGTAG TGCCATGACT GCAAGGCAAA CGAGCTTTAC CTACACCAAA
GACGGCACAA CTCAGGTTGA CGATGGCTAT CTGCCTTACA AGGTTATCAA TGCCAAGGGC
CATATCACCA CAACCGAATA CGATATGGGG CTAGGACTCC CCACCAAAGT GATAGCGCCC
AACAATATCG TCACTCAAAC AGAGTACGAT GGTATCGGTC GTCCGGTGCA GGTCAAACAG
ACAGGCAGTC CAACCCGCTA TTTACGCTAT TTACTCGCCA ATGAGGGTAA TAATCCGCCC
CAGGACAACG ACAATATTCC TGTGATGATG ACCCGCACCA GTGGTGCCGG TATGCCTGAA
ACGGAGCAGT ATTTTGACGG CCAAGGTCGT TTGCTGCGCA CGGCAACCCA GGGCTTTGAT
GGGGGGTATC AGTATCAGGA TAAACATTAT GATGCGCTTG GGCGTTTAAC CCGAGAATCG
ACGCCCTATG GTAACGGCAC GGCGGCAGAC TATACCGAGT TCAGTAATTT TGATGCGCTC
GATAGACCCG GCAGACGCAC CATTCCTAAT GGGCGCTCCG GTGGGCTGGA GTCCCTATAC
TCCTATAACG GGTTAACCAC GGATATCAAT GTCGAAGGAC GCTTGATGTC GCGCACCTAT
GGTAGTCAAG GCTGGTTGTA TGAAACCGTG GATGCACAAA ATGGCACCAA CCGCTTTGCT
TACGATAGTG CCGGTAGACC GTTAGTTATC CGCGATGCTA ACAATTGTGA TATCAAAGCA
ACTTACAACG GTTTTGGCCA TAAAACCCAG GTCATTGACC CTAACCAAGG CACCACCAAT
TTTGGTTACA ACAGCGTAGG CGAATTGGAT AAGCAAACCG ATGCCAATGG CGTGGTACAA
ACCTACGTAC TCGATGTACT GGGGCGCGTT ACCAGTAAAA CCACCACGGG CGGCAGTGCG
CCAGGTACGG CAACTTTTGT GTGGGACACG CCCAAACAAG GCCTACTCAC CTCTGAAACT
GAAAACGGCG TCGCTCGCAC TTATGCTTAC ACAACTGCAC TGCAATTGGC GCAAACCACG
GTGACCGTTG ATGGTGTAAG TCGTACGGTT AAACATCAAT ACGATGGCTT TTATGGTCGT
CCTAAGGCAC TCGAATACCC GAACGGCTTA ACACTCAAAT ATGCCTATAA CGATTACGGT
TATCTCGAGC AGACCAGCAA TGCTGCTTCT GGCTATCTCT ATCGTCAAGT CACAGCCATG
GATGAGGCAG GCCATACCAC TGGCGCTGAC CTTGCTAACC GGGTGATGTC TGAATCACGC
AGTTATTACA GCGAAGGCAC CATGGCAAGT GTTGCGGTGG ATGGCCCGCT TGGGCGTATT
CATGCGCACT ACTATGATGG TTATGATGAT TTTATGAATC TCACCAGTGA GCGTGATGGG
GTGACAGGCC TAACTAAGAG CTACCGTTAT GACACGCTTA ATCGCCTAAC GGAGTATCAG
TTTAGCAATA CCAATCCGAC CTTTAGCGCC ACGGTCAACT ACGGCTATGA CAAGGTGGGT
AACTTCCTTA AAAAGACCGA CTACAGTGCC AATAGCAGCA CTGCCTACCG TTATGGCGGC
AGCGCCTGTG GCTACAAGCC AAACGCAGTG TGCCAGCTAG ATAAACTCAA TGGCACCACA
GTGAGTTTTC AATACGATAA TCGCGGTAAT TTACGTGTGG GTGATGGTCT CACCATGACC
TACAATGCCA TGGATAAACC ACTGAGCGTC TCTGGCCGTG GTGCCACCAC GAGCTTTGTC
TATGGCAGCG ATAATATGCG CGCCAAGCAA AGCCGCACGG TCGGCAGTGC AACGACAACC
ACTTATTATG TCGATAAGTA TTATGAAGCA GACAGTGATG GTAGCTGGCG TGCCTACCTT
GATGATATCG CTGTACTCAG TTATACCTCT CAGCGTGGTC ATTTGTTGCA ATTTACTCTC
AAGGACCGCC TCGGCAGTGC CACCACCCTA GCCGACCAAA ATGGCAATAT TGTTAGTCAA
CGCTACTTTG ACCCCTTTGG ACGAACCGCA TCGACGGGCG GTGGGCATCG TACTGATATA
GTGAATAAAA ATACGCTGCA ATCAAAGTTG CAGGATTTGG ATATCACCAA TAAGAACCGC
CGCGGTTTTA CCGATCACGA GCATCTGAAT GAACAGCAGT TAATTCATAT GAACGGGCGG
ATTTACGACT ATAACCTCGG TCGGTTTATG AGTGTGGACC CGTTAATTCA GAGTCCCACC
TCGACCCAGA GCGTGAACCC GTATTCCTAT ATCATGAACA ACCCGCTAGC AGGAACAGAT
CCAACGGGGT ATGCAGCAGA TTATATTGCT GGTGTATCGT TCGGATATAA TGCTGGCTTA
ACTACTACGC AGCTTGAGTT GCTAAACAAC GCTGAATCAT GTAGCTACTG TACAGGGGAG
TTTGCTGCTG GTGTAAATTT GGGCAGCGAT TTCAAATCGG CCAAAAGAGA AGCGGGCTCA
TTATTTGCGG GGGCGTTGTT TTTAGCCAAA GCCAAGTTAC CAGCCTTACC AAACAGTGGG
GCTGATAGTA GTATTAAGAC TGAAACTGGC GAAGCCGCAG ATATTGGTTC AAAACCTGAT
TCTAGGGTAG ATAGTAGACC CAAGTTTTGG GCGTCAACGA ACAATGATGC TGTTGAGGAG
TCCAAAGACC AGGACGGCGT TATGAGATGT TCGAAATGTG ACACCGGACT TACAGGAGAA
AGGCAATCTA ATGGTAAGCG AGACTATCAA CTTGGTCATC CTGAAGACTC TCCTTGGGTG
GAGCAACAAG ACGAGTGGAG GGAAAAATCT AAGAATGGAG AAGATTTTAC GCGCAGAGAT
GTAACTGAGA AGTATCAGGA AGGCGTGAAA GTTGAGTGTG TTGGATGTAA TGCTTCTCAT
GGTGGACGTC TGGGCAACCA AAGAAAATCA GGTTCCAGTG GACGAGGTCA ATCAACTGGC
ATTAAAGTGG TTCGAGTGAC AGGGCGGCTA GATAGTATGA AACTTGATAA GTTGGAAAAA
AAATAA
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| Protein sequence | MLPLWTPHRH SSFAAFILLL GLSVGAPSEA ALTKPDVEID PILPSIPLPV AIPSLSGSRF
SSSVELRWSI DCSVTAVNIQ ESINNQSWTT IYTGLGQADN TAAYATFAVG GDVCSGDWSS
KRLLQLPNKT LPGYYYRINA CKGSLCSAYS PSILVGTPSA PSTPSAPASI STPATNTTGA
FSVSWAGVSG ATRYELQQRI NGGVWVAKYS GTATSYALSG LASGTYQYQA RACSTACSAW
KLSSNTQVSL PVLGSDWKNL SRVTVADAGG SDIEPAEVVD LNAAAVKGQA GVSGGQASYH
IPIDLPPGRN GVQPSISLSY NSQGGNGILG VGWSLNAGSS ISRCGATFAQ DGFTRAVTFN
ASTDRLCLDG QRLIVASGSY GASNAEYRTE MDSFVKVVQH GNINDSNSSF TVYKPDGSRA
TYGANANSRF VPSGLSTALS WKVTQESYSN GANTIDYQYD TSVAGEHLLS QILYTGSLGA
LGDRNITFYY QPRTDKRKSY LAGGLTTSTR LLSELKVNGA GGQSVHQYQF DYQLSPASGR
HLLRALAQCD ALGHCTPQTQ LTWRDSASTV KADELLIGGQ AVFSGELDIN KVTPHGDANG
DGSTDFPGYD SNAEQDMLGQ NGFTHEKACY NDYVSDGWIC VAFDADHDGK VDPFKSINNI
LHIQLSASGA ASYVSTGIPF NPNRFPSPDR LMSATDLNGD GDVDLMVFTV VSGKGYWRAY
LNTGNASTPY SANSFQLIHE TAIDPKLGSW PARPEVDVTM AGDIDGNGMV DFVVSSLGGS
GAANAPVPVL RSFILNNSTP QQWSVQWSSA PTYPFHTGDG FHFFQKLIDI NGDELADIIS
WRMVNNDRVI GYELNQGRAT FAPWVAFAGN LHLKERFHSV VVTAQEPMDV IYPQYFDSMQ
TADIDLDGIE EILLPGQRVI TGCAYVMFPG GTSGSGIKRT LCGDALYGDL PVNSFNTVPS
KPITSSDFDD SIYQYDAIKF VLQVDGRWGL VKQSTPYYGS AHESRLVDTF GDGLVDMLTT
YGPRVPGTGQ FNETWIQNPG SSMWGTRYGA YLSRNYGSGN GQTTNDYAAT DYLQAVTDGL
GNRSEWRYRP LSTGEGSADQ AKLYTTDHNE VGSGYVHFAS SMYVVQSFKQ SNGQSGENET
QYAYKGAMYN LQGRGFTGFN QIWEKDMQRD KTVHSVFKQK FPEVGLLMSQ TVVAPNKNGV
KGTVVELKNT WVDNPQHKAS LVRSKGVHHN IQTSSLQKSW DLDDGSLMSE IKQTVGTSPT
DVDEWGNIKK QTQKVTDYIK GQANTYTSVT ETGFVPDVNN WWLNKFNWIK TSHNTAQRNW
GDDPVGTMDK AQWQLQTVNT WDSNHKLPTK VTYTGSNSSC NRVEETELNS YGLPRWTKTT
GQSSTCSAMT ARQTSFTYTK DGTTQVDDGY LPYKVINAKG HITTTEYDMG LGLPTKVIAP
NNIVTQTEYD GIGRPVQVKQ TGSPTRYLRY LLANEGNNPP QDNDNIPVMM TRTSGAGMPE
TEQYFDGQGR LLRTATQGFD GGYQYQDKHY DALGRLTRES TPYGNGTAAD YTEFSNFDAL
DRPGRRTIPN GRSGGLESLY SYNGLTTDIN VEGRLMSRTY GSQGWLYETV DAQNGTNRFA
YDSAGRPLVI RDANNCDIKA TYNGFGHKTQ VIDPNQGTTN FGYNSVGELD KQTDANGVVQ
TYVLDVLGRV TSKTTTGGSA PGTATFVWDT PKQGLLTSET ENGVARTYAY TTALQLAQTT
VTVDGVSRTV KHQYDGFYGR PKALEYPNGL TLKYAYNDYG YLEQTSNAAS GYLYRQVTAM
DEAGHTTGAD LANRVMSESR SYYSEGTMAS VAVDGPLGRI HAHYYDGYDD FMNLTSERDG
VTGLTKSYRY DTLNRLTEYQ FSNTNPTFSA TVNYGYDKVG NFLKKTDYSA NSSTAYRYGG
SACGYKPNAV CQLDKLNGTT VSFQYDNRGN LRVGDGLTMT YNAMDKPLSV SGRGATTSFV
YGSDNMRAKQ SRTVGSATTT TYYVDKYYEA DSDGSWRAYL DDIAVLSYTS QRGHLLQFTL
KDRLGSATTL ADQNGNIVSQ RYFDPFGRTA STGGGHRTDI VNKNTLQSKL QDLDITNKNR
RGFTDHEHLN EQQLIHMNGR IYDYNLGRFM SVDPLIQSPT STQSVNPYSY IMNNPLAGTD
PTGYAADYIA GVSFGYNAGL TTTQLELLNN AESCSYCTGE FAAGVNLGSD FKSAKREAGS
LFAGALFLAK AKLPALPNSG ADSSIKTETG EAADIGSKPD SRVDSRPKFW ASTNNDAVEE
SKDQDGVMRC SKCDTGLTGE RQSNGKRDYQ LGHPEDSPWV EQQDEWREKS KNGEDFTRRD
VTEKYQEGVK VECVGCNASH GGRLGNQRKS GSSGRGQSTG IKVVRVTGRL DSMKLDKLEK
K
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