| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1116 |
|---|
| Symbol | |
|---|
| ID | 4258758 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 1291068 |
|---|
| End bp | 1293557 |
|---|
| Gene Length | 2490 bp |
|---|
| Protein Length | 829 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 638121737 |
|---|
| Product | trimethylamine-N-oxide reductase TorA |
|---|
| Protein accession | YP_737172 |
|---|
| Protein GI | 114046622 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
|---|
| TIGRFAM ID | [TIGR00509] molybdopterin guanine dinucleotide-containing S/N-oxide reductases
[TIGR02164] trimethylamine-N-oxide reductase TorA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.310041 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAGAA GAGACTTTTT AAAAGGCTTA GCCTCAACCT CTTTCGTTGC TTTAGGTGGC
AGCTCAGTGT TAGCGCCCTT AAACGCGCTA GCCAGCACAG GCTTAAATGA AGACGAGTGG
CTGACCACGG GCTCACACTT TGGCGCCTTT AAAATCAAAC GTAAAAACGG TGTGATTGCC
GAGGTCAAAG CCTTCGATTT AGATAAATAT CCAACGGACA TGATTAACGG TATCCGCGGC
ATGGTCTATA ACCCATCTCG CGTGCGTTAC CCTATGGTTC GCTTAGACTT TTTACTGAAA
GGCCATAAGA GCAATACCCA GCAACGGGGA GATTTCCGTT TCGTTCGTGT GACCTGGGAT
AAAGCATTAA AGCTGTTTAA ACACTCACTC GATGAAGTCC AAACCAAGTA CGGTCCATCG
GGCTTACACG CGGGGCAAAC CGGCTGGCGC GCCACCGGGC AACTGCATTC CAGCACCAGC
CATATGCAGC GTGCGGTGGG GATGCACGGC AACTACGTGA AGAAAATCGG TGACTACTCC
ACAGGTGCAG GCCAAACCAT TCTGCCCTAT GTGTTAGGTT CAACCGAAGT ATATGCCCAA
GGCACCTCTT GGCCGCTGAT CTTAGAAAAC AGCAACACTA TAGTGCTCTG GTCAAACGAT
CCTTACAAAA ACCTGCAAGT GGGTTGGAAC GCCGAAACCC ATGAGGCCTT CGCTTACCTC
GCGCAGTTAA AAGAGAAGGT CAAACAGGGC AAGATCCGCG TGATCAGCAT CGACCCTGTG
GTCACCAAAA CTCAGGCCTA CCTTGGCTGT GAACAGTTGT ATGTTAACCC ACAGACTGAC
GTGACGCTGA TGCTGGCCAT CGCCCATGAG ATGATCACCC AAAAACTTTA CGATGATAAA
TTCATCCAAG GCTACAGCTT AGGCTTCGAA GAGTTTGTGC CTTACGTAAT GGGCACTAAA
GATGGTATCG CCAAAACCCC TGAGTGGGCA GCGCCAATCT GTGGGGTTGA GCCACACATC
ATTCGCGATC TGGCGAAAAC CTTAGTTAAG GGCCGCACTC AAATCATGAT GGGTTGGTGT
ATTCAGCGCC AACAACACGG TGAGCAACCT TACTGGATGG CCGCAGTCCT CGCGACCATG
ATAGGTCAAA TTGGTTTGCC CGGCGGCGGC ATCAGCTATG GTCACCACTA CTCTAGCATT
GGTGTACCTG CAACAAACGC AGCGGCGCCC GGCGCCTTCC CGCGTAACTT AGACGAGAAC
CAAAAACCCC TGTTCGATAG CACCGACTTT AAAGGCGCGA GCAGCACCAT TCCCGTCGCC
CGTTGGATTG ATGCGATCCT CGAACCCGGC AAAACCATTG ATGCCAACGG TTCGAAAGTG
GTGTATCCCG ATATTAAGAT GATGATTTTC TCTGGCAATA ACCCATGGAA CCACCATCAA
GACCGTAACC GCATGAAGCA AGCCTTCCAT AAGTTGGAAT GCGTGGTCAC TATCGATGTG
AACTGGACGG CGACTTGCCG TTTCTCCGAC ATAGTGCTGC CCGCCTGCAC CACCTATGAG
CGCAACGATA TCGACGTATA CGGCGCCTAT GCTAACCGCG GTATTTTGGC GATGCAGAAG
ATGGTCGAGC CGCTGTTTGA GAGTTTGTCA GACTTTGAAA TCTTCACTCG CTTTGCCGCA
TTGATGGGTA AAGAGAAAGA ATACACCCGC AATATGAGCG AGATGGAGTG GATAGAAACC
CTCTATAACG AGTGTAAAGC TGCGAACGCG GGTAAGTATG AGATGCCAGA TTTTGCCACT
TTCTGGAAGC AAGGTTATGT GCACTTTGGT GATGGAGAGC TGTGGACACG CCACGCCGAC
TTTAGAAACG ATCCTGAAAT CAATCCATTA GGTACGCCTT CTGGCTTGAT TGAAATCTTC
AGCCGTAAGA TTGAACAGTT CGGTTATGAC GACTGCCAAG GCCATCCGAT TTGGATGGAA
AAAGCCGAGC GTAGCCATGG TGGCCCGGGT TCGGACAAAT ATCCTGTGTG GCTACAATCT
TGCCACCCAG ATAAACGTCT GCACTCACAG ATGTGTGAAT CGAAGGAATA CCGCGAAACC
TACACAGTCA ACGGCCGCGA ACCCATCTAC ATCAGCCCTG TGGATGCCAA AGCGCGCGGC
ATTAAAGATG GCGATATAGT GCGCGTCTTT AACGACCGTG GCCAACTGTT AGCGGGCGCC
GTGGTATCGG ATCGCTTCCC TAAAGGCGTA GTGCGAATTC ATGAAGGTGC ATGGTATGGC
CCAGTGGGTA AAGATGGCAG CGTCGAAGGT GGCGCCGAAA TTGGCGCCCT GTGTAGCTAT
GGCGACCCGA ATACTCTGAC CTTAGACATT GGCACATCGA AGTTGGCTCA AGCCTGCTCA
GCCTATACTT GTCTGGTCGA GTTTGAGAAA TACCAAGGCA AAGTCCCTAA GGTCAGCTCC
TTCGATGGTC CTATCGAAGT CGAAATCTAA
|
|---|
| Protein sequence | MNRRDFLKGL ASTSFVALGG SSVLAPLNAL ASTGLNEDEW LTTGSHFGAF KIKRKNGVIA
EVKAFDLDKY PTDMINGIRG MVYNPSRVRY PMVRLDFLLK GHKSNTQQRG DFRFVRVTWD
KALKLFKHSL DEVQTKYGPS GLHAGQTGWR ATGQLHSSTS HMQRAVGMHG NYVKKIGDYS
TGAGQTILPY VLGSTEVYAQ GTSWPLILEN SNTIVLWSND PYKNLQVGWN AETHEAFAYL
AQLKEKVKQG KIRVISIDPV VTKTQAYLGC EQLYVNPQTD VTLMLAIAHE MITQKLYDDK
FIQGYSLGFE EFVPYVMGTK DGIAKTPEWA APICGVEPHI IRDLAKTLVK GRTQIMMGWC
IQRQQHGEQP YWMAAVLATM IGQIGLPGGG ISYGHHYSSI GVPATNAAAP GAFPRNLDEN
QKPLFDSTDF KGASSTIPVA RWIDAILEPG KTIDANGSKV VYPDIKMMIF SGNNPWNHHQ
DRNRMKQAFH KLECVVTIDV NWTATCRFSD IVLPACTTYE RNDIDVYGAY ANRGILAMQK
MVEPLFESLS DFEIFTRFAA LMGKEKEYTR NMSEMEWIET LYNECKAANA GKYEMPDFAT
FWKQGYVHFG DGELWTRHAD FRNDPEINPL GTPSGLIEIF SRKIEQFGYD DCQGHPIWME
KAERSHGGPG SDKYPVWLQS CHPDKRLHSQ MCESKEYRET YTVNGREPIY ISPVDAKARG
IKDGDIVRVF NDRGQLLAGA VVSDRFPKGV VRIHEGAWYG PVGKDGSVEG GAEIGALCSY
GDPNTLTLDI GTSKLAQACS AYTCLVEFEK YQGKVPKVSS FDGPIEVEI
|
|---|
| |