| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1114 |
|---|
| Symbol | |
|---|
| ID | 4258756 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 1287014 |
|---|
| End bp | 1290067 |
|---|
| Gene Length | 3054 bp |
|---|
| Protein Length | 1017 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 638121735 |
|---|
| Product | multi-sensor hybrid histidine kinase |
|---|
| Protein accession | YP_737170 |
|---|
| Protein GI | 114046620 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR02956] TMAO reductase sytem sensor TorS |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCGCCTT TATCTTTATC GCGAAGTAGT TTAACCGGCA GACTCATGCT CGCCTTCGGC
GTGCTTGGGG TATTGCTGTT GCTACTGGTT AGCTTAGGTA GCCTGAGTTT GCATTGGCTT
AAACAGGCCG ACAGTTATCT GTATGAAGAA TCCTTACCCG CCTCTCAAGC CGCGCGCCAA
TTAGTGCAGG CTTCTAATGC CTTATCCGAT GGCGTGACCC AGTTAGGCCA AGTGGAGGAC
GAGCGGCAGC GGGAATTTAT CGGCCGTAAG CTCAGCCTTG AAAGCGCTAC AATGTTAAAT
AGCATCAAAG TGTTACTAAC GTTGGATGTG AACGAAGATA ATCATTTATC CGTATTAGCT
GGGCAAATCA TTGAGCAATT AACCTTATTG GGTAAGAGTG TCGGCCAGCG TATTACCTTA
GGCGATGAGT TACAGCTCAG AGCTCGCGAA TTATCGATTG CCGCAGGCCG CGCCTCTGAG
TTATTACAAT CCGAATTGGC GGTTGTCGAC TCGGCGATTT TGGCAAAACT CAGCCAAGCC
TACCCAGATA TGGCGGGGGA TAAACGCAGT GGCCAATTGC TCGATGATGT GATTGAGCGA
GAGTTAGATG TGCAGGAGCA GCTCAACCGT GCGCTCAAGT TAGTGCATCA AATTGCGCTG
CTCAGTCAGT TATTTGAGGC ATCCGAATTA CAGTCCGAAC TGCAATTGAG TGTTCCCCGT
TTATTGGCCA CCTTTGCCAG CACTACGCCT TCCCATCCGG CGGCGCAGAG TAAACCCGTA
CTCGGAACGG CAATCGAGCA GGCATCGAGC GCGGTCACAC AGCCGCCAAG GGGTGATGTT
GGCATCGATT TAATGGCGCT CACCACAGTA TCTGAGCTTA TTCGCGATCC CGGCAGGCTC
AAGGCGCTAA AGGCGGAGCT GGCAATCCTT CTTCATACCC CAAAAATCAT TAAATTACAG
CGAGAACTGA GCCAAAGCCT GCAGCGCCAA CAGCGGCAGC AACAGGAGTT AGCGGAAAAA
CTCTATAGCC TCAACACGCT GGTGGACAGT GCGCTTAATC AACAGCAGCA GCGGGCAGAG
CTTGCACGTA GCGATTATTT AATGCAGTTG TCCTACGCCC GTTTGGGGCT GTGGGGCACG
GGCATCTTAA TGTTGGTGAT CATCGGTGTG GTGGTTTACC GGGTGATCTA TCGCGGCATT
GCCCTTAGAT TAAATCAGGC GACCGAAGCC ATGTCGCGCT TAAGTTTAGG GGACACCAAT
GTGAGCCTCG ATGCCCACGG CGATGATGAA TTAACCGCCA TGGCCAATGC TATCGAGGCA
TTTAAGCGAA AAACCGCCCA TAACCTGAAA TTGCAGGCGG ATTTACGCCA GGTGGCCGAT
GAGCTGACCG AGCATAAAAA GGCTCTCGAA CAAACCGTGG CCACGCGGAC CCAGGAATTG
GCCGAAGCCA ACCTGCGCCT CGATGCGGAG GCCAAAGGCC ATGCTAAGGC AAGAATTATT
GCCGAGGAGG CGAGTCAGGC AAAATCCCAA TTCCTAGCGA CCATGAGCCA TGAGATTCGC
ACCCCGCTCA ATGGTTTACT CGGTACACTC ACCTTGCTCG GCCATAGTCA GTTACCGCCC
GTGCAGCAAC AGATGCTCGC GCTGTCGCAA TACAGCGGCA CGCTGCTGCA AACCGTGCTG
AGCGATATTC TCGATTTCTC CCGCCTCGAG CAGGGTAATT TAACCAATGA GCCGCGGCCA
ACGGATATCA ACGCCCTGCT CGATGAAGTG CTGGCGATCA TGGTGGCGGG CGCTAATTTA
GCGGGATTGA GCCTAAGGCT GAATCGTCCC CAGTTACCCG CGTGTATTCA GATCGATGGC
CCTAAGCTGA GGCAAGTGCT GTTTAACTTG ATTGGTAACG GCATTAAATT CACCCCCGAA
GGCGGCGTGA GTCTCAATGT CAGCGTGCGA GGCGCTAAGT TGGCCTTTGT GGTGGCCGAT
ACTGGGGTGG GGATTGCCCC CGAGGTGCGC GAGCAATTAT TTATGCCTTA CTGTGTATTG
CCTAATCAGG GGCGCAGTCG TGGGACAGGC TTAGGGCTTG CCATCTGCAA ACAGTTAGTT
GAACTGATGG ATGCACAGGG GCCGGGCATT TGGGTCAAGA GCGAGCCAGG CAAGGGCAGC
GAGTTTGGTT TTGAGCTGAG TTTTACCCGG TGTGACAAGG CATTAGATAC GCAAACTCAG
GTGCAAAAGC GGGTTAATCC CCAACGGGTG TTAGTGATTG AAGACAACAA GGTCAATGCC
ATGGTCGCGC AGGGATTTTT GGCGCATTTA GGCCACAGTT CCAGTTTGGC CATCAGTTGT
CAGCAGGCGA TAGCGCATGT GAGTGGCGAT AAGGCATTCG ATGCCGTGAT GCTCGATATT
CAGCTGAGTG ATGGCTCAGG ACTCACGCTA TTACCCCAGT TAAAGGCGTT ATTCGCCAAT
GACAATGTGA AGTTTGCCGC CTTTACCGCG CAGATGCAGA CGGAGGATCT TAGCCTGTAT
CGGGAGGCGG GGTTTGATAC TGTGTTAGCC AAACCCTTGA GCTTGCAAAC CCTGGCAGAA
TGGTTAGGCG TTGCGCGTGT GCCAGCTTCA ATGCCTGCTT TACCGTATGA GTCATCGTCG
CAATCGGCAG AGTCACTTCA ATCGCCGAAT AATGCCGAAC CTACCAGCCA GAGCCATCAA
GCTGAAACCT TGTTAGATCT TAATCAGTTA CAGCAAGATC TTGATGTCTT AGGCGTGAAA
GCCGTGAGTG ATATGTTGGC GCTCTATCGA ACCTCCAGTG CCGAGCAAAT TGAGCGACTC
TCGGCGCTAA GCTCTGTGGC GGGTTTCAGC GAGGGTGCAA AACTATTGCA CGCGCTTAAG
GGCAGCAGTG CCAGCATGGG GCTAAAAGCA CTGACCGAGT GTTGTCAGCA GTGGGAGAAA
ACACTCAACA CCACAGGGGA AAATGTATTG GATAGCAAAG CCGTCACTGA ATTAACCGCC
TGCTGGCAGA CGTCGATGAC AGCGCTTGAG CAATGGCTTG CAACACAGGA TTAG
|
|---|
| Protein sequence | MAPLSLSRSS LTGRLMLAFG VLGVLLLLLV SLGSLSLHWL KQADSYLYEE SLPASQAARQ
LVQASNALSD GVTQLGQVED ERQREFIGRK LSLESATMLN SIKVLLTLDV NEDNHLSVLA
GQIIEQLTLL GKSVGQRITL GDELQLRARE LSIAAGRASE LLQSELAVVD SAILAKLSQA
YPDMAGDKRS GQLLDDVIER ELDVQEQLNR ALKLVHQIAL LSQLFEASEL QSELQLSVPR
LLATFASTTP SHPAAQSKPV LGTAIEQASS AVTQPPRGDV GIDLMALTTV SELIRDPGRL
KALKAELAIL LHTPKIIKLQ RELSQSLQRQ QRQQQELAEK LYSLNTLVDS ALNQQQQRAE
LARSDYLMQL SYARLGLWGT GILMLVIIGV VVYRVIYRGI ALRLNQATEA MSRLSLGDTN
VSLDAHGDDE LTAMANAIEA FKRKTAHNLK LQADLRQVAD ELTEHKKALE QTVATRTQEL
AEANLRLDAE AKGHAKARII AEEASQAKSQ FLATMSHEIR TPLNGLLGTL TLLGHSQLPP
VQQQMLALSQ YSGTLLQTVL SDILDFSRLE QGNLTNEPRP TDINALLDEV LAIMVAGANL
AGLSLRLNRP QLPACIQIDG PKLRQVLFNL IGNGIKFTPE GGVSLNVSVR GAKLAFVVAD
TGVGIAPEVR EQLFMPYCVL PNQGRSRGTG LGLAICKQLV ELMDAQGPGI WVKSEPGKGS
EFGFELSFTR CDKALDTQTQ VQKRVNPQRV LVIEDNKVNA MVAQGFLAHL GHSSSLAISC
QQAIAHVSGD KAFDAVMLDI QLSDGSGLTL LPQLKALFAN DNVKFAAFTA QMQTEDLSLY
REAGFDTVLA KPLSLQTLAE WLGVARVPAS MPALPYESSS QSAESLQSPN NAEPTSQSHQ
AETLLDLNQL QQDLDVLGVK AVSDMLALYR TSSAEQIERL SALSSVAGFS EGAKLLHALK
GSSASMGLKA LTECCQQWEK TLNTTGENVL DSKAVTELTA CWQTSMTALE QWLATQD
|
|---|
| |