| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1103 |
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| Symbol | deoA |
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| ID | 4258674 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 1273688 |
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| End bp | 1275019 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638121724 |
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| Product | thymidine phosphorylase |
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| Protein accession | YP_737159 |
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| Protein GI | 114046609 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0213] Thymidine phosphorylase |
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| TIGRFAM ID | [TIGR02643] thymidine phosphorylase
[TIGR02644] pyrimidine-nucleoside phosphorylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.239025 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000305013 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTTCTAG CTCAAGAAAT TATACGTAAG AAACGCAATG GTTTAGCCTT AAGCACCGAA
GAGATCCAGT TCTTCGTCAA GGGCATAACC ACTAATGCAG TGTCGGAAGG TCAGATCGCC
GCATTAGGCA TGGCTGTGTA CTTTAATGAC ATGAATATGG ATGAAAGAAT CGCTTTGACT
ACTGCTATGC GCGATTCTGG CACTGTACTC AATTGGCAAT CACTTGGTCT TAATGGCCCA
GTCATCGATA AACACAGTAC TGGTGGTGTC GGTGATGTGA TTAGTCTCAT GCTCGGCCCT
ATGGCTGCAG CTTGTGGTGG TTATGTGCCG ATGATTTCGG GTCGTGGACT CGGACACACA
GGCGGTACGC TCGATAAGTT CGACGCTATT CCCGGTTATC AAACCGAACC TTCGAGTGAA
TTGTTCCGAA AAGTAGTTAA AGACGTTGGT GTGGCGATTA TCGGCCAAAC TGGCGATCTG
GTTCCCGCCG ATAAACGTTT TTACTCCATC CGTGACAACA CTGCGACCGT CGAATCCATC
TCCCTCATCA CCGCCTCAAT TCTCTCTAAG AAATTAGCTT GTAGTCTCGA TGCATTGGCG
ATGGACGTCA AAGTCGGTAG CGGCGCATTT ATGCCAACCT ACGAAGCCTC TGAAGAGCTT
GCACGCAGTA TTGCGGCGGT AGCCAATGGC GCAGGCACTA AAACGACGGC CTTACTCACC
GACATGAACC AAGTATTGGC CTCATGTGCC GGTAATGCGG TTGAAGTGAA AGAAGCCATC
GATTTCTTGA CTGGTGCTTA CCGTAATCCC CGTTTATACG CTGTGACTAT GGGGCTTTGT
GCCGAGATGT TACTCCTAGG CGGCCTCGCC ACCGATGAAG CGGATGCCCG TGCCAAGTTA
AATCGAGTAT TAGATAACGG CCGCGCTGCC GAGATCTTTG GCAAGATGGT TTCAGGCCTC
GGTGGTCCAG TCGATTTTGT TGAAAATTAC AGTAAGTACT TACCGCAATC GCAAATTATT
CGCCCTGTCT TTGCTGATAC TCAAGGTTAT GCTCACAGCA TGGACACCCG TGAACTCGGT
TTAGCCGTGG TCACCTTAGG AGGCGGTCGT CGTAAACCCG GTGATGCACT CGACTACAGT
GTTGGTCTGA CGCAAGTTTG TGCACTTGGT GATAAGATTG ATGCTTCTAC GCCGATTGCC
GTGATCCATG CTCAATCCGA AGATGCCTTT GCTCAAGCGG AAGAAGCCGT GAAAAAAGCG
ATTCGTATCG ACGAAGTCGC TCCAGAAAAA ACACCTGAGA TCTATGCTTA TATCCGAGCA
GCGGATCTTT AA
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| Protein sequence | MFLAQEIIRK KRNGLALSTE EIQFFVKGIT TNAVSEGQIA ALGMAVYFND MNMDERIALT
TAMRDSGTVL NWQSLGLNGP VIDKHSTGGV GDVISLMLGP MAAACGGYVP MISGRGLGHT
GGTLDKFDAI PGYQTEPSSE LFRKVVKDVG VAIIGQTGDL VPADKRFYSI RDNTATVESI
SLITASILSK KLACSLDALA MDVKVGSGAF MPTYEASEEL ARSIAAVANG AGTKTTALLT
DMNQVLASCA GNAVEVKEAI DFLTGAYRNP RLYAVTMGLC AEMLLLGGLA TDEADARAKL
NRVLDNGRAA EIFGKMVSGL GGPVDFVENY SKYLPQSQII RPVFADTQGY AHSMDTRELG
LAVVTLGGGR RKPGDALDYS VGLTQVCALG DKIDASTPIA VIHAQSEDAF AQAEEAVKKA
IRIDEVAPEK TPEIYAYIRA ADL
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