Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_1097 |
Symbol | |
ID | 4258668 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 1266100 |
End bp | 1267002 |
Gene Length | 903 bp |
Protein Length | 300 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638121718 |
Product | lipoprotein NlpI |
Protein accession | YP_737153 |
Protein GI | 114046603 |
COG category | [R] General function prediction only |
COG ID | [COG4785] Lipoprotein NlpI, contains TPR repeats |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00121066 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000284829 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGAGTCTTA AAATTAGAAC CGCTGTTGTT GCTGTGCTGG CGGGTGCCAG CTTGATGTTG GCTGGATGTG CGACCACTAA GTCTCCCTTA GACAACCAAA ATGACGTTGA AGGCAAGTTA GTCATCGCTC CTGTGATGCC AGACTATAAA GTTGAAGTCA CCCTTGCCAA GCTAAATGAA ATTTTATCGG CGGTTGAGCT AACCAACGAG CAGCGCGCAC GTTTTCATTA CGACCGTGGC GTGATTTACG ATAGCGTCGG TTTACGCTTA ATGGCGCGCA TTGATTTTAT GCAGGCGCTT AAACTGCAAC CCGACTTAGC CGATGCCTAC AATTTCCTTG GTATTTATTA CACCCAAGAG GGTGAATACG ATAGTGCCTA TGAGGCGTTT GATGGTGTAT TAGAGCTGTC GCCAAACTAT GACTATGCCT ACTTGAATCG CGGCATTGCG CTTTATTATG GCGATCGGAA CGATCTCGCC TTAAAAGATA TGCAAGCATT TTACGCTGGC GATAATAAAG ATGGTTATCG CGCATTGTGG TTATATCTGA TTCAATTCAA GGATAATGCT GAGGAAGCTA AACTTAAGTT ACAGGAACAC CGTAAGGGAC TGGAAGCCGA TGCCTGGTCA ACTGTGATTG TTGATTATTA TCTTGGCGTT AAGAGCCGCG AGCAGGTTTT TGCCGACGCC AAGTTAGGCC TGACCCACCC CAAAGAATAT GCTGAGCGTC TATGTGAAGC GTATTTCTAC CTCGCGAAAA TCGAAATTGC CAAGAATCAA TATCAAGAGG CGGCAAATTA TTTCCGTCTT GCCCTCGCGA CCAATATCTA TGACTTTGTT GAGCACAGAT ACGCGCGAAT TGAGCTAGCT AAAGTTAAAG GTTTGCTCGA AGGCACAAAA TAA
|
Protein sequence | MSLKIRTAVV AVLAGASLML AGCATTKSPL DNQNDVEGKL VIAPVMPDYK VEVTLAKLNE ILSAVELTNE QRARFHYDRG VIYDSVGLRL MARIDFMQAL KLQPDLADAY NFLGIYYTQE GEYDSAYEAF DGVLELSPNY DYAYLNRGIA LYYGDRNDLA LKDMQAFYAG DNKDGYRALW LYLIQFKDNA EEAKLKLQEH RKGLEADAWS TVIVDYYLGV KSREQVFADA KLGLTHPKEY AERLCEAYFY LAKIEIAKNQ YQEAANYFRL ALATNIYDFV EHRYARIELA KVKGLLEGTK
|
| |