Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_1090 |
Symbol | nusA |
ID | 4257997 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 1255440 |
End bp | 1256939 |
Gene Length | 1500 bp |
Protein Length | 499 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638121711 |
Product | transcription elongation factor NusA |
Protein accession | YP_737146 |
Protein GI | 114046596 |
COG category | [K] Transcription |
COG ID | [COG0195] Transcription elongation factor |
TIGRFAM ID | [TIGR01953] transcription termination factor NusA [TIGR01954] transcription termination factor NusA, C-terminal duplication |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0136267 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0716025 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATAAAG AGATTCTGCT AGTCGCTGAG GCGGTTTCAA ATGAAAAGGC CGTTCCACGC GAGAAAATTT TTGAAGCGCT AGAGACAGCT CTGGCAACTG CTACCAAGAA AAAATACGAA GGTGATATCG ACGTTCGTGT TGCTATCGAC CGTAAAACGG GCGCCTATGA AACTTTCCGC CGTTGGATGG TGATTGATGA CAACGGCGTC GCGTTAGAAA ACCCATACCG CGAAATCACC TTGGAAGCTG CGCGTTTTGA AAACCCAGAA ATCCAGCCTG GTGATTTTAT CGAAGACGAG ATCGAATCAG TGGCATTCGA CCGTATTACC ACCCAAACCG CTAAGCAAGT GATCGTACAA AAAGTACGTG AAGCCGAGCG TGCGCAAGTG GTTGAACAGT TCCAAGATAA AGAAGGCGAA CTGATCACTG GAGTTGTGAA AAAAGCAACC CGTGAAAGCG TAGTCGTTGA CTTAGGCAAT AACGCCGACG GCGTATTGTT CCGTGAAGAT TTAATTTCTC GCGAATCTTT CCGTCCTGGT GACCGTGTGC GTGCATTGCT TTATTCAGTC CGTCCTGAAG CTCGTGGTGC GCAGTTATTC TTAACCCGCA CTAAGCCAGA CATGCTGATT GAGCTGTTCC GCGTAGAAGT ACCTGAAATT GCCGACGAGT TGATCGAAGT CATGGGTGCC GCGCGCGACC CAGGTGCACG CGCTAAGATC GCGGTGAAAT CAAACGACCG TCGCATCGAT CCAATCGGTG CTTGCGTTGG TATGCGTGGT GCACGTGTTC AAGCCGTATC GAATGAACTC GGTGGTGAGC GTGTGGATAT CGTATTGTGG GATGACAATC CAGCACAATA TGTGATCAAC GCAATGGCGC CTGCTGATGT GGCTTCTATC ATCGTTGATG AAGACAACCA CTCAATGGAT ATCGCTGTTG AAGCGGAAAG TTTAGCTCAG GCCATTGGTC GCAATGGTCA AAACGTACGT TTAGCGACTC AGTTGACTGG CTGGGAGCTG AACGTGATGA CAGTAGAAGA CATGAACAAG AAACACCAAG CCGAAAGCGC CAAGGTGAAG AGCTTATTCA TGAAATCTCT GGATGTAGAT GAAGATTTTG CACAAGTACT GGCCGACGAA GGTTTTACCT CGCTGGAAGA AGTGGCTTAT GTGCCTGTGT CAGAATTATT AGCAATTGAC GGCTTCGATG AGGATATCGT TGAAGCGTTA CGTGAACGTG CAAAGGCTGC GATCTCTACT CGAGCGCTCG CATCTGAAGA AGCACTAGAT GGTGTGGAGC CAAGTGAAGA GTTATTAGCA CTTGAAGGTG TTGAAAGACA CTTAGCCTAT GTTTTAGCAA GCAAAGGTAT CGTGACTCTA GAAGACTTGG CTGAACAAGG CATTGATGAT TTGATCGAAA TTGAAGAATT GACAGAAGAA AAAGCAGGTG CGCTGATCAT GGCTGCCCGC AACATCTGTT GGTTTGGCGA AGAAGCATAA
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Protein sequence | MNKEILLVAE AVSNEKAVPR EKIFEALETA LATATKKKYE GDIDVRVAID RKTGAYETFR RWMVIDDNGV ALENPYREIT LEAARFENPE IQPGDFIEDE IESVAFDRIT TQTAKQVIVQ KVREAERAQV VEQFQDKEGE LITGVVKKAT RESVVVDLGN NADGVLFRED LISRESFRPG DRVRALLYSV RPEARGAQLF LTRTKPDMLI ELFRVEVPEI ADELIEVMGA ARDPGARAKI AVKSNDRRID PIGACVGMRG ARVQAVSNEL GGERVDIVLW DDNPAQYVIN AMAPADVASI IVDEDNHSMD IAVEAESLAQ AIGRNGQNVR LATQLTGWEL NVMTVEDMNK KHQAESAKVK SLFMKSLDVD EDFAQVLADE GFTSLEEVAY VPVSELLAID GFDEDIVEAL RERAKAAIST RALASEEALD GVEPSEELLA LEGVERHLAY VLASKGIVTL EDLAEQGIDD LIEIEELTEE KAGALIMAAR NICWFGEEA
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