| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1083 |
|---|
| Symbol | rrmJ |
|---|
| ID | 4257990 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 1248182 |
|---|
| End bp | 1248811 |
|---|
| Gene Length | 630 bp |
|---|
| Protein Length | 209 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638121702 |
|---|
| Product | 23S rRNA methyltransferase J |
|---|
| Protein accession | YP_737139 |
|---|
| Protein GI | 114046589 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0293] 23S rRNA methylase |
|---|
| TIGRFAM ID | [TIGR00438] cell division protein FtsJ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0110143 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.147612 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGGTA AAAAACGTAC GGCCAGTTCC AATCGCTGGA TGCTGGAACA CTTTGATGAT
CATTATGTCA AACTAGCACA GAAACGGGGA TTGCGTTCTC GCGCTGCGTT TAAGCTTGAA
GAGCTTCAGC AAAAGGATCA ATTGATCCGC CCAGGTATGA CGGTTGTTGA CTTAGGGGCC
GCTCCAGGTG GTTGGTCACA GGTTGCTGTT AAGCTAGCTG GAGACAAAGG TAAAGTCATC
GCCTGTGATA TTTTACCTAT GGATCCCATC GTCGGCGTGG ATTTCTTGCA AGGGGACTTT
CGTGAAGAGA AAGTGCTCGA AGCATTGCTA ACTCGCGTCG GTGCGGATAA GGTTGACGTT
GTATTGTCTG ATATGGCGCC CAACATGAGT GGTTCAGATG GTGTCGATCA GCCGCGCGCC
ATGTATTTAG TCGAGTTGGC GTTAGATATG TGTCATCAAG TGTTGGCACC TAACGGCAGT
TTTGCGGTCA AAGTCTTTCA GGGGGAGGGG TTTGACGAAT ATATGAAAGC GGTTAAAGAG
GCATTCAAAG TCGTAAAAAC ACGTAAACCG GACTCGTCGC GGGCACGCTC CCGTGAGGTC
TATCTTGTGG CGACAGGGTA CAAGTTGTAG
|
|---|
| Protein sequence | MSGKKRTASS NRWMLEHFDD HYVKLAQKRG LRSRAAFKLE ELQQKDQLIR PGMTVVDLGA
APGGWSQVAV KLAGDKGKVI ACDILPMDPI VGVDFLQGDF REEKVLEALL TRVGADKVDV
VLSDMAPNMS GSDGVDQPRA MYLVELALDM CHQVLAPNGS FAVKVFQGEG FDEYMKAVKE
AFKVVKTRKP DSSRARSREV YLVATGYKL
|
|---|
| |