| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1081 |
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| Symbol | secF |
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| ID | 4257988 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 1246851 |
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| End bp | 1247735 |
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| Gene Length | 885 bp |
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| Protein Length | 294 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638121700 |
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| Product | preprotein translocase subunit SecF |
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| Protein accession | YP_737137 |
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| Protein GI | 114046587 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.121562 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.1541 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAATC TCAATCTGAC CAAATGGCGT TATGTGTCGA GCGCTATCTC TATCTTTTTA
ATGTTGGCCT CTCTCACCAT TATTGGTATG AAAGGCTTTA ACTGGGGCTT AGACTTTACA
GGCGGTGTGG TGACCGAGGT GCAGCTCGAT AGGCGGATCA CCAGCAGCGA GCTGCAACCG
CTATTGAACG CGGCTTATCA GCAAGAGGTG ACTGTGATTT CGGCCAGTGA GCCCGGGCGT
TGGGTATTGC GTTATGCCGA CACTGCACAA AGCAATGTGG ATATTGCGCA AACCTTAGCG
CCACTGGGCG AAGTGCAAGT GCTAAATACC AGTATTGTCG GCCCGCAGGT GGGTAAAGAG
CTGGCAGAGC AGGGGGGACT CGCGTTATTA GTCGCTATGT TAGCTATCTT AGGCTATTTG
AGTTATCGCT TTGAATGGCG CCTAGCCTCT GGTGCGCTAT TTGCGTTAGT ACACGACGTC
ATTTTTGTAC TCGCGTTTTT TGCGCTGACA CAGATGGAAT TTAATCTAAC TGTGCTCGCG
GCGGTGCTGG CTATCCTTGG CTACTCACTG AATGACTCAA TCATTATTGC CGATCGTATT
CGTGAATTAT TGATTGCAAA ACCCAAACTT GCGATTCAGG AGATTAACAA CCAAGCGATT
GTCGCGACAT TTTCGCGCAC TATGGTGACC TCGGGGACCA CTCTGATGAC GGTTGGAGCA
CTATGGATAA TGGGCGGTGG GCCGCTAGAA GGATTCTCGA TAGCCATGTT TATCGGCATT
TTAACCGGCA CGTTCTCCTC GATCTCAGTC GGGACCTCCT TGCCAGAGTT TCTCGGCTTA
GCCCCTGAGC ACTATCAAGT TAAACCCATT AGCGATACAC CGTAG
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| Protein sequence | MKNLNLTKWR YVSSAISIFL MLASLTIIGM KGFNWGLDFT GGVVTEVQLD RRITSSELQP
LLNAAYQQEV TVISASEPGR WVLRYADTAQ SNVDIAQTLA PLGEVQVLNT SIVGPQVGKE
LAEQGGLALL VAMLAILGYL SYRFEWRLAS GALFALVHDV IFVLAFFALT QMEFNLTVLA
AVLAILGYSL NDSIIIADRI RELLIAKPKL AIQEINNQAI VATFSRTMVT SGTTLMTVGA
LWIMGGGPLE GFSIAMFIGI LTGTFSSISV GTSLPEFLGL APEHYQVKPI SDTP
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