Gene Shewmr7_1080 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_1080 
SymbolsecD 
ID4257987 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp1244974 
End bp1246848 
Gene Length1875 bp 
Protein Length624 aa 
Translation table11 
GC content51% 
IMG OID638121699 
Productpreprotein translocase subunit SecD 
Protein accessionYP_737136 
Protein GI114046586 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.944586 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.180173 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATAAAA TTCAGAGTAA AAAGCTGCTA AATCATTATT CAGCTTGGAA ATACGTTGTG 
CTTATCGTCA CGATTATCGT GATGTTATTT AGCGCCTTAC CGACTTGGTA TGGAGAAGAT
GCCGCCGTGC AGGTGGGCGC TAAAGCGGGG CTTAATTTAA GCCCCATCGA ACTGCGGGAT
AAATTAAAGG CGCAGGGCGT TGATGTTAAG CGTATCGAAG TTAAGCATGC CCAACATGGC
AACGCCAACA GCTCAGAAGA CGGGCAAACC CTTATCGTGC TCAATGATGA CAGCGAGCAA
ACCTTAGTGA AGACCTTAGT GTCATCCATG GTCAGTGAGC CGAAAGAGCT TACGCTGGCA
CTAGTGAGTG CCGCGCCAAG TTGGCTGCAA AATATGGGCT TTGAACCGAT TAAACTCGGG
CTCGACTTAC GCGGTGGGGT GCAATTTTTG CTGGATGTTG ATGTGCAGCC CGTCTATCAA
GCTCAAGCCG GTGCATTAGT AGAGTCCCTT CGACAGTTTT TGCGTGAACA GCAAATTCGC
GGCGCCAGTG TGCGTATTGA TAGCACGCGC GATGACGCAG GGGGGCAAAT CGCAATTGCA
TTTAATGCAG TGGCTGAATC CACCAATAAT GCGCGCTCAA CCATTCGCCA GTTTATGCAA
CAAAGCTGCC CGACTTGGCA ATTAACCAAT GCGGATAATG GCTTAGTCGT AAAGCTCGCT
CAAGAAGAGC AAATCAAGTT ACGTAATTTA ACCGTGCAGC AAAACCTGCA AATTATGCGT
AGCCGGATTG AGGAGCTAGG GATTACAGAA GCCTTAGTGC AGCGTCAGGG CGAACACCGT
ATCCGCATCG AGCTGCCCGG TGTCCAAGAC CCCGCCGCCG CGAAAAACGT GATTGGTGCG
ACCGCAAGCT TGGCCTTTTT TGAAGTTAAA GAATCGGGTT CAGTGAATGC GCAGGTACTG
AAGGATAAAT CTGGCAATCC TGTTTATGTG GCACGCACGC CAGTATTGGG CGGCGATCAT
ATTGTCGATG CCCGCGCCAA TATTGGCGAA ATGGGCATGG CCGAAGTGAA CATTCACCTC
GACCGAATAG GCGGCCAAAA AATGTCGGAG TTTTCCCGCG CCAATATCGG TAAGCCGATG
GCAACGTCTT ACAGCGAATA TAGCCGGGAT GAGCAGGGTA AAGCCAAGCA GACCCAAGAG
ATTATCAGTG TCGCGACCAT TCAATCGCAG CTGGGAGATC GTTTCAGGAT CACTGGCGCA
GGCACCTATC AAGAGGCGCA GCAATTAGCC TTGTTGCTAC GTGCTGGCTC CATGACTGCG
CCTGTGACTA TTGTTGAAGA ACGTACCATT GGCCCAACCC TTGGCGCCGA AAACATTCAA
AACGGTTTTG CAGCCCTCGG CCTTGGTATG GGAATTACCT TGCTGTTTAT GGCGCTCTGG
TATCGCCGTC TCGGTTGGGT TGCCAACGTG GCCTTGATTG CCAACATGGT GATCCTCTTT
GGTTTGCTGG CGCTGATCCC CGGCGCTGTA CTGACCTTAC CCGGCATTGC TGGTCTGGTG
TTGACGGTTG GTATGGCGGT CGATACCAAC GTGCTGATCT TCGAGCGGAT TAAAGACAAG
TTAAAAGAGG GGCGCAGCTT CGCCCTAGCG ATTGACACTG GCTTTGACAG TGCGTTCTCA
ACCATTTTCG ACGCTAACTT CACCACTATG ATCACCGCAG TTGTGCTCTA TTCCATCGGT
AATGGTCCCA TCCAAGGCTT TGCCTTGACC TTAGGTTTAG GTCTGTTGAC CAGTATGTTT
ACCGGTATTT TTGCCTCAAG AGCCTTAATC AACCTAGTGT ATGGGCGTGA TGCGCGCCGC
CATGTGAGGG TATAA
 
Protein sequence
MDKIQSKKLL NHYSAWKYVV LIVTIIVMLF SALPTWYGED AAVQVGAKAG LNLSPIELRD 
KLKAQGVDVK RIEVKHAQHG NANSSEDGQT LIVLNDDSEQ TLVKTLVSSM VSEPKELTLA
LVSAAPSWLQ NMGFEPIKLG LDLRGGVQFL LDVDVQPVYQ AQAGALVESL RQFLREQQIR
GASVRIDSTR DDAGGQIAIA FNAVAESTNN ARSTIRQFMQ QSCPTWQLTN ADNGLVVKLA
QEEQIKLRNL TVQQNLQIMR SRIEELGITE ALVQRQGEHR IRIELPGVQD PAAAKNVIGA
TASLAFFEVK ESGSVNAQVL KDKSGNPVYV ARTPVLGGDH IVDARANIGE MGMAEVNIHL
DRIGGQKMSE FSRANIGKPM ATSYSEYSRD EQGKAKQTQE IISVATIQSQ LGDRFRITGA
GTYQEAQQLA LLLRAGSMTA PVTIVEERTI GPTLGAENIQ NGFAALGLGM GITLLFMALW
YRRLGWVANV ALIANMVILF GLLALIPGAV LTLPGIAGLV LTVGMAVDTN VLIFERIKDK
LKEGRSFALA IDTGFDSAFS TIFDANFTTM ITAVVLYSIG NGPIQGFALT LGLGLLTSMF
TGIFASRALI NLVYGRDARR HVRV