Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_1080 |
Symbol | secD |
ID | 4257987 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 1244974 |
End bp | 1246848 |
Gene Length | 1875 bp |
Protein Length | 624 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 638121699 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_737136 |
Protein GI | 114046586 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.944586 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.180173 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATAAAA TTCAGAGTAA AAAGCTGCTA AATCATTATT CAGCTTGGAA ATACGTTGTG CTTATCGTCA CGATTATCGT GATGTTATTT AGCGCCTTAC CGACTTGGTA TGGAGAAGAT GCCGCCGTGC AGGTGGGCGC TAAAGCGGGG CTTAATTTAA GCCCCATCGA ACTGCGGGAT AAATTAAAGG CGCAGGGCGT TGATGTTAAG CGTATCGAAG TTAAGCATGC CCAACATGGC AACGCCAACA GCTCAGAAGA CGGGCAAACC CTTATCGTGC TCAATGATGA CAGCGAGCAA ACCTTAGTGA AGACCTTAGT GTCATCCATG GTCAGTGAGC CGAAAGAGCT TACGCTGGCA CTAGTGAGTG CCGCGCCAAG TTGGCTGCAA AATATGGGCT TTGAACCGAT TAAACTCGGG CTCGACTTAC GCGGTGGGGT GCAATTTTTG CTGGATGTTG ATGTGCAGCC CGTCTATCAA GCTCAAGCCG GTGCATTAGT AGAGTCCCTT CGACAGTTTT TGCGTGAACA GCAAATTCGC GGCGCCAGTG TGCGTATTGA TAGCACGCGC GATGACGCAG GGGGGCAAAT CGCAATTGCA TTTAATGCAG TGGCTGAATC CACCAATAAT GCGCGCTCAA CCATTCGCCA GTTTATGCAA CAAAGCTGCC CGACTTGGCA ATTAACCAAT GCGGATAATG GCTTAGTCGT AAAGCTCGCT CAAGAAGAGC AAATCAAGTT ACGTAATTTA ACCGTGCAGC AAAACCTGCA AATTATGCGT AGCCGGATTG AGGAGCTAGG GATTACAGAA GCCTTAGTGC AGCGTCAGGG CGAACACCGT ATCCGCATCG AGCTGCCCGG TGTCCAAGAC CCCGCCGCCG CGAAAAACGT GATTGGTGCG ACCGCAAGCT TGGCCTTTTT TGAAGTTAAA GAATCGGGTT CAGTGAATGC GCAGGTACTG AAGGATAAAT CTGGCAATCC TGTTTATGTG GCACGCACGC CAGTATTGGG CGGCGATCAT ATTGTCGATG CCCGCGCCAA TATTGGCGAA ATGGGCATGG CCGAAGTGAA CATTCACCTC GACCGAATAG GCGGCCAAAA AATGTCGGAG TTTTCCCGCG CCAATATCGG TAAGCCGATG GCAACGTCTT ACAGCGAATA TAGCCGGGAT GAGCAGGGTA AAGCCAAGCA GACCCAAGAG ATTATCAGTG TCGCGACCAT TCAATCGCAG CTGGGAGATC GTTTCAGGAT CACTGGCGCA GGCACCTATC AAGAGGCGCA GCAATTAGCC TTGTTGCTAC GTGCTGGCTC CATGACTGCG CCTGTGACTA TTGTTGAAGA ACGTACCATT GGCCCAACCC TTGGCGCCGA AAACATTCAA AACGGTTTTG CAGCCCTCGG CCTTGGTATG GGAATTACCT TGCTGTTTAT GGCGCTCTGG TATCGCCGTC TCGGTTGGGT TGCCAACGTG GCCTTGATTG CCAACATGGT GATCCTCTTT GGTTTGCTGG CGCTGATCCC CGGCGCTGTA CTGACCTTAC CCGGCATTGC TGGTCTGGTG TTGACGGTTG GTATGGCGGT CGATACCAAC GTGCTGATCT TCGAGCGGAT TAAAGACAAG TTAAAAGAGG GGCGCAGCTT CGCCCTAGCG ATTGACACTG GCTTTGACAG TGCGTTCTCA ACCATTTTCG ACGCTAACTT CACCACTATG ATCACCGCAG TTGTGCTCTA TTCCATCGGT AATGGTCCCA TCCAAGGCTT TGCCTTGACC TTAGGTTTAG GTCTGTTGAC CAGTATGTTT ACCGGTATTT TTGCCTCAAG AGCCTTAATC AACCTAGTGT ATGGGCGTGA TGCGCGCCGC CATGTGAGGG TATAA
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Protein sequence | MDKIQSKKLL NHYSAWKYVV LIVTIIVMLF SALPTWYGED AAVQVGAKAG LNLSPIELRD KLKAQGVDVK RIEVKHAQHG NANSSEDGQT LIVLNDDSEQ TLVKTLVSSM VSEPKELTLA LVSAAPSWLQ NMGFEPIKLG LDLRGGVQFL LDVDVQPVYQ AQAGALVESL RQFLREQQIR GASVRIDSTR DDAGGQIAIA FNAVAESTNN ARSTIRQFMQ QSCPTWQLTN ADNGLVVKLA QEEQIKLRNL TVQQNLQIMR SRIEELGITE ALVQRQGEHR IRIELPGVQD PAAAKNVIGA TASLAFFEVK ESGSVNAQVL KDKSGNPVYV ARTPVLGGDH IVDARANIGE MGMAEVNIHL DRIGGQKMSE FSRANIGKPM ATSYSEYSRD EQGKAKQTQE IISVATIQSQ LGDRFRITGA GTYQEAQQLA LLLRAGSMTA PVTIVEERTI GPTLGAENIQ NGFAALGLGM GITLLFMALW YRRLGWVANV ALIANMVILF GLLALIPGAV LTLPGIAGLV LTVGMAVDTN VLIFERIKDK LKEGRSFALA IDTGFDSAFS TIFDANFTTM ITAVVLYSIG NGPIQGFALT LGLGLLTSMF TGIFASRALI NLVYGRDARR HVRV
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