| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1050 |
|---|
| Symbol | lipB |
|---|
| ID | 4255526 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 1214652 |
|---|
| End bp | 1215305 |
|---|
| Gene Length | 654 bp |
|---|
| Protein Length | 217 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 638121662 |
|---|
| Product | lipoate-protein ligase B |
|---|
| Protein accession | YP_737106 |
|---|
| Protein GI | 114046556 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0321] Lipoate-protein ligase B |
|---|
| TIGRFAM ID | [TIGR00214] lipoate-protein ligase B |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000221543 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00513124 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | TTGCAAGACA CCACTTTGCA TATTCGGCAT CTGGGACAAC AGGATTACGA GTCTGTGTGG
CATGCGATGC AGCATTACAC CGACACACGT AACAGCGATA GCCCAGACGA ACTGTGGATC
GTTGAACATC CACCCGTATT TACCCAAGGC CAAGCAGGTA AAAGCGAACA TATTTTGAAT
CCGGGTGATA TTCCCGTGAT CCAAGTGGAT CGTGGCGGCC AAGTGACTTA CCACGGGCCG
GGACAATTAG TTGTCTACCC TCTCCTCGAT ATTAAACGCA GCAAGATTGG CGTCCGTCAG
CTCGTGACCC ATATCGAGCA AAGCATTATC GATATGCTCG CCAAATACGA TATCAATGCC
TACGCCAAGG CCGATGCGCC GGGCGTGTAT GTGGATGAGC GCAAAGTTGC CTCTTTAGGG
CTTCGCATTC GTAAAGGCTG CTCTTTCCAC GGCTTAGCAC TGAATGTCGA TATGGATCTA
GCGCCGTTTC GCCGTATTAA CCCCTGCGGT TATGCTGGGC TCGAAATGGT GCAATGCAAG
GAACTGGGCG GCCCACAAAC CGTGATAGAA GCAGGCGACC AACTCATTAT TACCCTTAGC
CAACTATTGG GCTACCAACA ACTAGTTCAT CATCAAGGAT TAGCAGCGTC ATGA
|
|---|
| Protein sequence | MQDTTLHIRH LGQQDYESVW HAMQHYTDTR NSDSPDELWI VEHPPVFTQG QAGKSEHILN
PGDIPVIQVD RGGQVTYHGP GQLVVYPLLD IKRSKIGVRQ LVTHIEQSII DMLAKYDINA
YAKADAPGVY VDERKVASLG LRIRKGCSFH GLALNVDMDL APFRRINPCG YAGLEMVQCK
ELGGPQTVIE AGDQLIITLS QLLGYQQLVH HQGLAAS
|
|---|
| |