Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_1012 |
Symbol | |
ID | 4255698 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 1170318 |
End bp | 1170977 |
Gene Length | 660 bp |
Protein Length | 219 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638121623 |
Product | ribose-5-phosphate isomerase A |
Protein accession | YP_737068 |
Protein GI | 114046518 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0120] Ribose 5-phosphate isomerase |
TIGRFAM ID | [TIGR00021] ribose 5-phosphate isomerase |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.689272 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTCAAG ATGAAATGAA AAAAGCCGCT GGCTGGGCTG CTCTCAAATA CGTTGAGAAA GACAGCATTG TGGGTGTAGG CACAGGCTCA ACCGTCAATC ACTTTATCGA TGCCCTCGCT ACCATGAAGG CCGATATTGA AGGTGCGGTA TCAAGCTCAG AAGCCTCAAC CCAAAAGATG AAAGCCCTTG GCATCCCAGT TTATGACTTA AACAGCGTCG ATAAATTATC TGTGTATGTC GATGGAGCCG ATGAAATCAA CGGCCATATG GACATGATCA AAGGCGGCGG TGCGGCATTA ACCCGCGAGA AAATTGTCGC GGCAGTGGCT GAAAAGTTTG TCTGTATCGT GGATAACACT AAACAAGTGG ATATTTTGGG TGAATTCCCA CTGCCCGTTG AAGTGATCCC AATGGCGCGC TCTTACGTGG CCCGTGAACT CGTCAAACTC GGCGGCGACC CAGTGTACCG TGAAGGCGTT GTGACTGATA ACGGCAACGT GATCCTCGAC GTTTACAACC TTAAGATCAT CAATCCTAAG GAATTAGAAG AAAAGATCAA CGCCATCGTC GGCGTAGTGA CTAACGGTTT GTTCGCGAAA CGCGGCGCCG ATGTGTTATT GGTTGGCACC CCTGAAGGCG TGAAAACCTT TACCGCTTAA
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Protein sequence | MTQDEMKKAA GWAALKYVEK DSIVGVGTGS TVNHFIDALA TMKADIEGAV SSSEASTQKM KALGIPVYDL NSVDKLSVYV DGADEINGHM DMIKGGGAAL TREKIVAAVA EKFVCIVDNT KQVDILGEFP LPVEVIPMAR SYVARELVKL GGDPVYREGV VTDNGNVILD VYNLKIINPK ELEEKINAIV GVVTNGLFAK RGADVLLVGT PEGVKTFTA
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