Gene Shewmr7_0973 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_0973 
Symbol 
ID4256520 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp1119631 
End bp1121682 
Gene Length2052 bp 
Protein Length683 aa 
Translation table11 
GC content48% 
IMG OID638121584 
ProductTonB-dependent receptor 
Protein accessionYP_737029 
Protein GI114046479 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG4772] Outer membrane receptor for Fe3+-dicitrate 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00145441 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCAGTC GCTACTTTGT GATGTCGCTG ACCGCGCTAG CGGTTTCCTG TGTTTACACT 
CATCCCCTCA ATGCAAACCC GCTCTATTCT CAGACGCTCG ATTTGATTGA ACTCAATAAC
CAGTATCACT CCAGTGATGA TGGGATGCAG TTGAGTTACT TAAATAGTTT AACCCTACTA
CGGGCAGATC ACAGTGGTAA CGGCGCGAAT ATCAGTATGC GTTCCGCCAG CCAAGGCGTG
GCTGTGATGC AGGATAGAGT GTACTTCTCA CCCGCGCCAT ATTCGGCGCC GCAGTTACAA
CTATTGCCCA ATCTTTTGCT GCAGCAAAAT GTGACGAGTA CACCACTGGC GAATATGACG
GTGGGTGGAC AAGGGGCCTT TGGTGTCGTG AATTATCAAA GCCTTGAAAT CACTGATCGA
CCTCAGTCGG GCAGCTTTAA GGTTGAGGGG GCAACGGATT CCGACTTCAA TGCCGGCATG
ACTTGGGGCG TTAAGCAAAA GGAATATGGA GCCTTATTCG CGGCGAATTA TCTTCAAGAA
CAAGATGATG CGAATTTTTT CAACAACAGT GATGCCGACA GAAAGAAAAC CGACATACTG
TTTAAGGTCA ACGCCGCCAG TTTGCTTGGA GCGCGAAGTC CGCAGCAAAC GGAATTTACC
TATCAATTTA TCGACGATGA TAGTTATCGC TCACAACTTG GCAGTACTTT AGCTGACTGG
CAACAGGATC CCTTACTCTT ATATTCGGCA ACGGCACAAG ATAAACTCCA GGGACGGCAG
CACAAGTATC AGCTATCACA CCAAGTGGAT TTAGCTGGCA GTAAAGTGAT CAGCGACTTT
TACTATCAAT CCTATTCACA ACAATTGAAT CAGCTTGGTT TATTTAATGG GCAAGAGATT
AACGCAGCAA CCCTTGCAGA TATTGCTGAC TTTGATCATG CGCCAACCGC GGATGCTATT
GATGTCGCTC TGCTCGTCCA AGACAACGAT TACAGTGCCT TTGGCGCCCA GACCCAAGCC
ATAAACCAAT ACGGTGAACA TCAAATTATT TACAGCGCTC GCTATCATAC GGATAAGGCC
GAGATGCGCT TTGGTGAGCA GACGGCGTTG TGGCAAGCGG ATAGAAGTCT TGTCTCTGAT
GACTCGGGTG CCATATTAGC CTACACCGAT GATGCCACCG CGCTGACATC GGCAATCGAT
TCGTTATTCC GCTGGCAAGG CATGCAAATC AAGTTAGGGC TTACTTACGA GCATGTGAGT
ATTAATCGTG AAGTGAAGCA AGCGTTTGCG GGGCTGGACG AAGCGGATTT CTCCGATAGT
GATTGGATGC CGCAGCTAGG TGTGCTCTAT GATGCGGGCG ATTGGCGTTT TAGTACCGAT
ATCCGTCGGG CCTGGACTGC AGCAAGCGCG GGAAATACCA CTCAAGAGGC TCAGGTGTCG
CTCCATTATC AAGTGAGTGC CCAATATGCG CGCGAAGGGA TAAAAGCGGA TTTACGGGCA
TATGTTCAAG AGTTCGATAA TCTGCATGTG GATTGCGATA GCTATTCGAT GTGCGCCGAT
GAACGCCTGT TAACTCAAGA GAATATTCCC GATGTGCTCA CCTACGGCGT AGAACTTGGC
CTTGGCTATC GCTGGGATCT GGGTGGGGTA GAGCTACCCT TAGGACTAAA TTATCAATAT
CTTAGCGCCG AGTATCAAAC CAGCACTTGC ACCGATGTCC AAGGCTGTGT TTTAGAGGGA
GATAGATTGG CTTGGTTACC CGAACATCAA TTGCAATTGA GTGCGGGAAT TAAATATGCC
CAATATCGAT TAAATCTTGA GGCGGCCTAT CAATCGGAGC GTGATTTCAG TCAGTTTGGC
AGTGAGCAAG AACGGATTTC GGGCCAATGG CGGGTCGATT TGGCGGCGAA TTATGATTTT
GATAAACACC ATAGGTTGTA TTTTAGGGTC GAAAATCTGC TCGATGAGTC CTTAGTCACC
ACAGCATCAA ATAGCGGAAT TCGGTCTGAA AATGGAAGGA TCAGCTATTT GGGTTATCAA
TGGCGTTTTT AA
 
Protein sequence
MSSRYFVMSL TALAVSCVYT HPLNANPLYS QTLDLIELNN QYHSSDDGMQ LSYLNSLTLL 
RADHSGNGAN ISMRSASQGV AVMQDRVYFS PAPYSAPQLQ LLPNLLLQQN VTSTPLANMT
VGGQGAFGVV NYQSLEITDR PQSGSFKVEG ATDSDFNAGM TWGVKQKEYG ALFAANYLQE
QDDANFFNNS DADRKKTDIL FKVNAASLLG ARSPQQTEFT YQFIDDDSYR SQLGSTLADW
QQDPLLLYSA TAQDKLQGRQ HKYQLSHQVD LAGSKVISDF YYQSYSQQLN QLGLFNGQEI
NAATLADIAD FDHAPTADAI DVALLVQDND YSAFGAQTQA INQYGEHQII YSARYHTDKA
EMRFGEQTAL WQADRSLVSD DSGAILAYTD DATALTSAID SLFRWQGMQI KLGLTYEHVS
INREVKQAFA GLDEADFSDS DWMPQLGVLY DAGDWRFSTD IRRAWTAASA GNTTQEAQVS
LHYQVSAQYA REGIKADLRA YVQEFDNLHV DCDSYSMCAD ERLLTQENIP DVLTYGVELG
LGYRWDLGGV ELPLGLNYQY LSAEYQTSTC TDVQGCVLEG DRLAWLPEHQ LQLSAGIKYA
QYRLNLEAAY QSERDFSQFG SEQERISGQW RVDLAANYDF DKHHRLYFRV ENLLDESLVT
TASNSGIRSE NGRISYLGYQ WRF