| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0929 |
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| Symbol | |
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| ID | 4255351 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 1062814 |
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| End bp | 1064208 |
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| Gene Length | 1395 bp |
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| Protein Length | 464 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638121540 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_736985 |
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| Protein GI | 114046435 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.240329 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGAAAAACG ATGGTTATAC TTCCCTTAGC CAATTTGTTG ATCTGTTATT AGATGCCATC
TGCGTCGTCG ATAAAACCGG ACACTTCGAG TTTGTTAGTG CGGGCGCCGA GCGTATTTTT
GGCTATACCC CAGATGAAAT GATTGGTATG CAGATGTTAG ATCTCGTGTA TCCAGAGGAC
CGGGAGCGTA CCATTGCCGC AGCTAATGAC ATTATGGCGG ACAGCTTTAA GCTAGATTTT
GAAAATCGCT ATGTTCGTAA AGATGGCACC CTAGTCGATA TCCTCTGGTC TGCCCGTTGG
TCTGAGGACC GTCAGCAGCG GATTGCCGTG GCCCGAGACA TTACGAAGAG CAAGGCTGCC
GAGCGGCGTC AGGCTGCCCT GTATCAGATT TCTGAAGCCG TGCATGTAGC AGAAGATCTC
CTCGCTCTGT ATCGACGCAT TCACCAGATC ATGGCCAAGC TGTTGCCGAC AGATAATTTT
GCCATCGCGC TGTATGATCC AGATCTTAAC GAGTTAGATT TTCCCTATCG CGTGTTGGCA
GGGGAACAAT ATCAGGCGCA ATCTGCCAGT TTTGACCTTT TTACAGAGCA AGTGATCCAA
AGCGAAGAGT CATTGCTGCT TTGCCCTGTA GCCATGTCGG CCTCTCAAGT GGAGAACAAG
CTTTCAGCAA ACCAATCAAT AAGCTGGCTT GGTGTACCTC TGACATTACA GAAGGGCATT
ATTGGTGCCT TGATAATGCA TAGCACCCTA GATTCTCGGG CTTATACTCA GCAGGATCGC
GAACTGGTTG AGTTTGTGTC GACGCAAATC GCCTTCGCTA TCGAGCGTCG GCAAATGCTG
GCGCGATTGG AGCATATTGC ACTTTATGAT CAACTCACTC ATTTGCCCAA TCGCGAATTG
TTTTATGACA GATTTCAGAA GGCGTTATCG CGCGCGAATC GCGAGTCGAG CTATTTTTCC
TTACTCTACT TGGATTTAGA CAAGTTTAAA TGGGTGAATG ATACCTATGG CCATGGCGTG
GGTGATCTCT TATTGCAAAT TACCGCGCAG CGGATTTTAG GATGCGTTAG AAGCTCGGAT
ACGGTTGCAC GCTTTGGTGG TGATGAGTTT GTGGTCCTGC TAGAGCGTGT CGATTCGGCG
CAGAATACCT TACTCGTTGC GCAAAAAATT CTTGAAGTGC TTAACCAACC CTTCGAGTTG
GTGAATCAGC AGATCCATAT TTTGCCTAGC ATTGGGATTG CTCTGTATCC CGAGCATGGC
AGGGATGAAA AACAACTGCT GTCCTGCGCC GATACGGCGA TGTATAAGGC GAAGCGCAAT
GGTGGCAATC GGATTGAAAT GGGTTATCAA GGCTTAAAGA CCAGCTATTT CGAGCCTCTG
ATCCAGCCCC ATTGA
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| Protein sequence | MKNDGYTSLS QFVDLLLDAI CVVDKTGHFE FVSAGAERIF GYTPDEMIGM QMLDLVYPED
RERTIAAAND IMADSFKLDF ENRYVRKDGT LVDILWSARW SEDRQQRIAV ARDITKSKAA
ERRQAALYQI SEAVHVAEDL LALYRRIHQI MAKLLPTDNF AIALYDPDLN ELDFPYRVLA
GEQYQAQSAS FDLFTEQVIQ SEESLLLCPV AMSASQVENK LSANQSISWL GVPLTLQKGI
IGALIMHSTL DSRAYTQQDR ELVEFVSTQI AFAIERRQML ARLEHIALYD QLTHLPNREL
FYDRFQKALS RANRESSYFS LLYLDLDKFK WVNDTYGHGV GDLLLQITAQ RILGCVRSSD
TVARFGGDEF VVLLERVDSA QNTLLVAQKI LEVLNQPFEL VNQQIHILPS IGIALYPEHG
RDEKQLLSCA DTAMYKAKRN GGNRIEMGYQ GLKTSYFEPL IQPH
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