| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0902 |
|---|
| Symbol | |
|---|
| ID | 4257425 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 1034621 |
|---|
| End bp | 1036345 |
|---|
| Gene Length | 1725 bp |
|---|
| Protein Length | 574 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 638121513 |
|---|
| Product | TrkA domain-containing protein |
|---|
| Protein accession | YP_736958 |
|---|
| Protein GI | 114046408 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0471] Di- and tricarboxylate transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGTGACT TGTGGCTATT AGCTATTGTG TTGTTTGGAT TAGTGGCTGG CTTAATCGCC
GGCCGCATTA ATCCCGCTGT GTTGTTTTTA TTTGCTTTTT TACTCTGTTA CCTCCTAGGA
ATGGTATCAC TCGACACGGC GCTCACTAGC TTTACCAACA CAGGTTTAGT CACACTGGTG
TTATTGGTGC TGGCGGCGAC GGCGCTGGAG AAAACCTCAC TGCTGGGCAA GTTAAGCCAG
GTGATTGGTA ACAGCTCGCT TGCAGTGACT ATGACAAAGC TAGGGTTTTC AACGGCGCTG
CTGTCATCTT TTACCAATAA CACCGCGGTT GTCGCTTCTT TGATTGGGGT CGTGCGCCGT
AATCAAGCAC ATGCCCCCGC TAAGTTATTA TTACCACTTA ACTATGCTGC GATTTTGGGC
GGCACGCTGA CCCTGATTGG CACCTCAACT AACCTTATCG TCAACTCGTT TGTGGAGAAT
GCGGGTCTGC CGGCGCTGGG GTTCTTCGAG TTCACCCCTG TGGCGGCGCT GATTGTGGTC
TTAGGGATTG TGATGCTGAT AGTGCTCGCC AATACCTTGC CCGACAGGCG GGATGAATCG
ACTGAGGAAG CGTTGCCCTA TCTACTAGAA GCCCACGTGG CCAAAGGCTC GTCTTTAGTC
GGTCGCAGCG TGGTGGATAA CAAATTAAGG GCCCTAAAAA AGCTCTATTT AGTCGAACTT
GAGCGAAGCG GCATTTGTAT TTGCCCTGTC CCGCCCCAGT TAGTGTTACA GGCGGACGAT
GTGCTGCGTT TCAGTGGCGC AGTGGAGTCG GTGGAGTTGT TACATCAATT CGATGGTCTC
GATTGGTTTG GTAAACATCA AGCCAAGGGG CAAAATCTGG TCGAAGCCGT GTTAGCGCCT
TCGTCGAGTC TGGTGGGCAG CACCTTGAAG GAATCACGCT TTCGCGAGCA GTTTGATGCG
GCGGTGATGG CGATTCGCCG TGGCCACCAT CCGCTAAAGG GCGGCTTGGG CGATATCGTA
TTACAGCCTG GCGATGTGTT GCTGTTAACG CCGGGAGATG GTTTTAGCAC CAATTCTAAG
CTAAGCACCG AATTTGCTGC CGTAAGCGGG CTCGATTTAA ATGTGCGTTT AGACAGTCGC
CGTAGCCGTA TCGTGTTAGC CGGATTTGTG TTGACGATTG GCTTGAGTCT CACGGGGATT
TTACCCTTAG CCAAAGGGTT AGTGCTGTTA TTGCTCAGCT ATTTTGCCAT CGGCGCCGTC
ACCTTATCTG AGCTTAAACG CCGTTTCCCG CTGGAATTAG TGGTGATAGT GGGCAGTGCC
TTAGGCTTGG CGAATCTGAT GATGAATACC GGCCTTGCCG AAGGTTTAGC GCAAGGGCTA
CTTGGCGCAA TCAATGGCTA TGGGGTGTTT GGTGCCTTTG TGGGCGTTTA TTTAGTCACG
CTGCTGCTGA CAGAACTCGT TACCAATAAT GCCGCAGCAG CCTTGGCGTT TCCCATCGCT
TATGCGGTTG CGCTGAATTA TGGCGTCGAT CCACGGCCGT TTATCATGGC TGTAGTGTTT
GGTGCCAGCG CCAGCTTTAT TTCGCCCTAT GGTTATCAAA CCAACTTGAT GGTGTTTAAC
GCGGGCAACT ATCGTTTCAG TGACTTTTTA CGCTTAGGAC TACCCTTATC CCTGCTTTAT
TCCCTAATCG TGATTTTTAT GGTGCCAGTC ATCTTTCCGT TTTAA
|
|---|
| Protein sequence | MSDLWLLAIV LFGLVAGLIA GRINPAVLFL FAFLLCYLLG MVSLDTALTS FTNTGLVTLV
LLVLAATALE KTSLLGKLSQ VIGNSSLAVT MTKLGFSTAL LSSFTNNTAV VASLIGVVRR
NQAHAPAKLL LPLNYAAILG GTLTLIGTST NLIVNSFVEN AGLPALGFFE FTPVAALIVV
LGIVMLIVLA NTLPDRRDES TEEALPYLLE AHVAKGSSLV GRSVVDNKLR ALKKLYLVEL
ERSGICICPV PPQLVLQADD VLRFSGAVES VELLHQFDGL DWFGKHQAKG QNLVEAVLAP
SSSLVGSTLK ESRFREQFDA AVMAIRRGHH PLKGGLGDIV LQPGDVLLLT PGDGFSTNSK
LSTEFAAVSG LDLNVRLDSR RSRIVLAGFV LTIGLSLTGI LPLAKGLVLL LLSYFAIGAV
TLSELKRRFP LELVVIVGSA LGLANLMMNT GLAEGLAQGL LGAINGYGVF GAFVGVYLVT
LLLTELVTNN AAAALAFPIA YAVALNYGVD PRPFIMAVVF GASASFISPY GYQTNLMVFN
AGNYRFSDFL RLGLPLSLLY SLIVIFMVPV IFPF
|
|---|
| |