| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0860 |
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| Symbol | |
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| ID | 4257121 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | - |
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| Start bp | 978712 |
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| End bp | 980445 |
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| Gene Length | 1734 bp |
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| Protein Length | 577 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638121471 |
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| Product | spermidine synthase |
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| Protein accession | YP_736916 |
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| Protein GI | 114046366 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.801712 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACGAAT CCCAAATAAC CAGCTCTGCG ACTCAAACGG TAAAAACGAG TCGCCTAAGC
TGGTTCGACG ATGTCCTACT ATTGGGTATT ATGGCCGTAC TCGCTGGGTG CGGCCTGATC
TACGAATACC TGTTGTCCCA CTACGCAGGC CGGATCTTAG GCGCGTTAGA AGCCGCCATT
TACACTATGA TCGGCCTGAT GATCGTCTCC ATGGGTCTTG GTGCCTTTGC CGCTCGCAAA
ATTAAAGATG CCTTTACTGG CTTTGTGGTG CTCGAACTCA CGGTCGCGCT CTGCGGCTCG
CTGGCGATTT TAATTACCGC AGCCGTAATA GGTTTTGGTC AGCAGCTGCC GATGCTTATC
GCCTCCACCT TAGGCTTACC ACCGGATCAA CTACCCGAGG GTGGCATGAT TGGCTCACTG
CAAAAGCTGA GCGAATATTT ACCCTATGTC TGGGGCGTGC TGCTCGGCTT GATGATCGGG
ATGGAAATTC CACTGATCGC GAGGGTGAGG CAATCTCTAT CAGATGAACA CTTACTGCAT
AATGCCGGTA CCATTTATGG CGCCGACTAT ATTGGCGCAG GGATTGGCGC GGCCATTTGG
GTCGGCTTTA TGCTGGCCAT CGATATTCAA CTCGCTGCCG CGCTGACCGC CAGCTTTAAC
TTGCTCGCCG GCTTTGTGTT TATCTGGCGT TTTTGGCCCA AGATCCAAAG GGCGAAATTA
TTGCTCGCAG GGCATTTTGT GGTCACGGGC GTATTATTGC TGCTCGCCAT TCAAGGGCCG
AGTTGGGAGC TGCAGTTCAA CAATCTGCTC TATAAAGACA AAGTGGTTTA CGCTAAGGCC
ACGCGTTTTC AACAACTCAC CTTTACCGAG CGCTTACGCG GCAATGGCCT CTCCCCCATA
TACTCTTTGT ATATCAATGG CCGATTACAG TTTTCGAGTA TCGATGAGCA TATCTACCAT
GCGTTTTTAG TTCACCCAAC GCTTGCGGCC AGCGCTCGCC ACAACAAAGT TTTAATCATT
GGTGGTGGTG ATGGACTGGG CCTAAAGCAA GTGCTGCGTT GGGAGCCTGA GCAAGTGACC
TTGCTCGATC TTGATGCCGC ATTGGTGCAA CTCTTTAAAA CGCCCGATAC GGATATGCCT
AAGCGTCTAA GCCAAGCCCT GTTAGCCCTC AATGGCAATG CCTTTAACGA TCCTCGCGTT
AAGGTGATCC ACGACGACGC CTTTAACGGA GTCGATAAAT TGATTGCCGC AGGAGATAAA
TACGATGCCA TTATTGTGGA CTTGCCCGAT CCTAGCCATC CCGATTTAAA TAAGCTCTAT
TCGGATTATT TCTATCGCAA GCTCAAGGAA CTAATGAGCA GTGATGGCGC TCTGACTGTA
CAGTCAACCT CGCCCTATCA CGCGCAAAAG GCCTTTATCT CGGTCGCGAA AACCTTAGCT
TTAGCGGGGT TTGACGTAAA ACAGTATCAC CATAACGTCC CAAGCTTTGG AGAATGGGGC
TGGAGCATTG CCACCCTATC GGGAAAAGAT GCCCAGCATC GCCTTGGCGA GCTGACAACA
CTACCGATAG CGGATGACTG GTTAACCTTA GGTTTAGTCA AAGGCGCCTT TGAATTTCCT
GCCAATTTTT ATCAGGACGC CGCAAGTATT AAGCCTAACG AACTGGGTTC GTTGCAGTTG
TACCATTATC ATCAACAGGC ATGGTCCGAA ACCCAAGGAC TGGATCTTTT TTAA
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| Protein sequence | MHESQITSSA TQTVKTSRLS WFDDVLLLGI MAVLAGCGLI YEYLLSHYAG RILGALEAAI
YTMIGLMIVS MGLGAFAARK IKDAFTGFVV LELTVALCGS LAILITAAVI GFGQQLPMLI
ASTLGLPPDQ LPEGGMIGSL QKLSEYLPYV WGVLLGLMIG MEIPLIARVR QSLSDEHLLH
NAGTIYGADY IGAGIGAAIW VGFMLAIDIQ LAAALTASFN LLAGFVFIWR FWPKIQRAKL
LLAGHFVVTG VLLLLAIQGP SWELQFNNLL YKDKVVYAKA TRFQQLTFTE RLRGNGLSPI
YSLYINGRLQ FSSIDEHIYH AFLVHPTLAA SARHNKVLII GGGDGLGLKQ VLRWEPEQVT
LLDLDAALVQ LFKTPDTDMP KRLSQALLAL NGNAFNDPRV KVIHDDAFNG VDKLIAAGDK
YDAIIVDLPD PSHPDLNKLY SDYFYRKLKE LMSSDGALTV QSTSPYHAQK AFISVAKTLA
LAGFDVKQYH HNVPSFGEWG WSIATLSGKD AQHRLGELTT LPIADDWLTL GLVKGAFEFP
ANFYQDAASI KPNELGSLQL YHYHQQAWSE TQGLDLF
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