| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0850 |
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| Symbol | |
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| ID | 4257111 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | - |
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| Start bp | 967336 |
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| End bp | 970530 |
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| Gene Length | 3195 bp |
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| Protein Length | 1064 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638121461 |
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| Product | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
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| Protein accession | YP_736906 |
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| Protein GI | 114046356 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
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| TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.282209 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.198583 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGCGA TTACTATGTT CAAAGCGAGT GAAGTGCTGG CAGGCCGCTA CGATTCTGCC
AATCTCGACG AACTGTTCAA AGCCGTCACC GACAACTATA TTGTCGATGA AGAACAATAC
TTGTCAGAGC TAATCAAACT AGTGCCCTCC AGTGATGAAG CCATCGAGCG CGTCACTCGT
CGTGCCCACG AACTAGTCAA CAAAGTTCGT CAATTCGATA AGAAAGGTTT AATGGTAGGC
ATCGACGCCT TCCTGCAGCA ATACAGCTTA GAAACACAGG AAGGGATTAT CCTGATGTGT
TTAGCCGAAG CCCTGCTGCG TATTCCCGAT GCGGCCACCG CCGACGCCTT GATTGAAGAT
AAACTCTCAG GCGCGAAATG GGATGAACAC TTAAGCAAGA GCGATTCGGT TCTGGTTAAC
GCCTCCACTT GGGGCCTGAT GCTCACTGGC AAAATCGTCA AACTCGATAA AAAAATTGAT
GGTACGCCAA GCAACCTGTT AAACCGTTTA GTGAATCGTT TAGGTGAGCC TGTGATCCGC
CAAGCCATGA TGGCGGCGAT GAAGATCATG GGTAAGCAGT TCGTACTTGG CCGCACCATG
AAAGAAGCGC TCAAGAACAG CGAAGACAAG CGTAAATTAG GTTACACCCA CTCCTACGAT
ATGCTGGGTG AAGCCGCACT GACGCGTAAA GACGCCGAAA AATACTTTAA CGATTATGCC
AATGCGATTA CCGAATTAGG TGCGCAAAGC TATAACGAAA GCGAATCTCC ACGCCCAACC
ATTTCTATCA AGCTGTCGGC ACTGCACCCA CGTTACGAAG TCGCTAACGA AGACCGTGTA
CTGACCGAGC TGTATGACAC AGTTATTCGC TTAATTAAGT TAGCCCGTGG CTTAAATATC
GGTATTTCTA TCGACGCCGA AGAAGTTGAC CGCCTCGAAC TGTCGCTAAA ACTGTTCCAA
AAACTGTTTA ATTCTGACGC CACTAAGGGT TGGGGCTTAC TCGGTATCGT AGTGCAAGCT
TACTCTAAGC GCGCCCTGCC GGTACTGGTA TGGTTAACCC GCTTAGCGAA AGAGCAAGGC
GACGAAATCC CCGTTCGCTT AGTGAAAGGC GCCTACTGGG ATAGCGAGCT GAAATGGGCA
CAACAAGCTG GCGAAGCCGC ATACCCACTC TACACCCGTA AAGCCGGTAC AGACGTGTCT
TACTTAGCCT GTGCGCGCTA TCTGTTGTCC GATGCGACAC GCGGCGCAAT TTACCCACAA
TTTGCCAGCC ACAACGCGCA AACGGTTGCC GCGATTTCCG ATATGGCGGG CGATCGTAAC
CACGAGTTCC AACGTCTACA CGGCATGGGA CAAGAGCTGT ACGACACTAT TCTGTCGGAA
GCTGGCGCGA AAGCGGTACG TATCTATGCC CCAATCGGTG CCCATAAAGA TCTGCTGCCC
TACTTAGTGC GTCGCCTGCT GGAAAACGGT GCGAACACCT CGTTCGTGCA CAAGCTGGTC
GACCCGAAAA CCCCTATCGA GTCTTTAGTG GTTCACCCAC TGAAAACCCT GACAGGCTAC
AAAACCCTGG CTAATAACAA AATCGTTTTA CCTAGCGATA TCTTCGGTAG TGATCGCAAA
AATTCCAAGG GACTCAACAT GAACATCATT TCAGAAGCAG AGCCATTCTT CGCGGCCTTA
GACAAATTCA AATCGACGCA GTGGCAAGCG GGTCCTCTGG TTAACGGTCA AACCTTAACT
GGCGAACACA AAACCGTTGT TAGCCCATTC GATACCACTC AAACCGTGGG TCAAGTGGCC
TTTGCCGACA AAGCGGCTAT CGAACAAGCT GTCGCCTCTG CCGATGCCGC GTTTGCAACT
TGGACTCGTA CTCCCGTTGA AGTGCGCGCC TCAGCCCTGC AAAAGCTGGC GGATCTGTTA
GAAGAAAACC GCGAAGAACT GATTGCCCTC TGTACCCGTG AAGCGGGCAA GAGCATTCAA
GACGGTATCG ACGAAGTGCG TGAAGCCGTA GACTTCTGCC GCTACTACGC GGTGCAAGCT
AAGAAGCTGA TGTCAAAACC TGAACTGCTC CCAGGCCCAA CGGGTGAGTT AAACGAACTC
TTCCTCCAAG GTCGCGGTGT GTTCGTGTGT ATCAGCCCAT GGAACTTCCC ATTGGCGATC
TTCTTAGGCC AAGTTTCGGC AGCCCTCGCT GCGGGTAACA CTGTAGTGGC TAAACCTGCT
GAACAGACTT CTATCATTGG TTACCGCGCA GTGCAGCTTG CACACCAAGC GGGTATTCCT
ACAGACGTGC TGCAATATCT ACCAGGTACA GGCGCTACCG TAGGTAACGC ACTGACGGCT
GATGAGCGCA TCGGCGGCGT ATGTTTTACC GGTTCAACTG GCACAGCCAA ACTCATCAAC
CGCACACTGG CAAACCGTGA AGGCGCAATT ATTCCGTTAA TCGCCGAAAC CGGTGGTCAA
AACGCTATGG TGGTAGACTC TACTTCTCAG CCAGAACAAG TGGTTAACGA TGTAGTATCT
TCATCCTTCA CCAGTGCGGG TCAACGCTGC TCGGCGCTGC GTGTACTCTT CCTACAGGAA
GATATTGCAG ACCGCGTTAT CGATGTACTC CAAGGTGCAA TGGATGAGTT AGTGATTGGC
AACCCAAGTT CAGTGAAAAC CGACGTAGGC CCAGTTATCG ATGCGACCGC GAAGGCTAAC
CTTGACGCCC ATATCGACCA CATCAAGCAA GTTGGTAAGT TGATCAAGCA AATGTCTCTG
CCAGCGGGTA CTGAGAATGG CCACTTTGTG TCGCCAACTG CCGTTGAAAT CGATTCAATC
AAAGTGCTTG AAAAAGAACA CTTTGGCCCA ATCCTGCACG TGATCCGTTA CAAGGCATCT
GAACTTGCCC ATGTGATCGA TGAAATCAAC AGCACAGGCT TTGGCTTAAC CTTAGGTATC
CACAGCCGTA ACGAAGGCCA TGCCCTCGAA GTAGCTGACA AGGTTAACGT AGGTAACGTG
TACATCAACC GTAACCAAAT CGGCGCAGTC GTTGGCGTAC AACCTTTCGG CGGTCAAGGT
CTGTCTGGCA CAGGTCCAAA AGCAGGTGGT CCACACTACT TAACTCGCTT CGTGACTGAA
AAGACTCGCA CTAATAACAT CACCGCTATC GGTGGTAACG CGACCCTGTT GTCACTGGGT
GATAGCGACG CCTAA
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| Protein sequence | MEAITMFKAS EVLAGRYDSA NLDELFKAVT DNYIVDEEQY LSELIKLVPS SDEAIERVTR
RAHELVNKVR QFDKKGLMVG IDAFLQQYSL ETQEGIILMC LAEALLRIPD AATADALIED
KLSGAKWDEH LSKSDSVLVN ASTWGLMLTG KIVKLDKKID GTPSNLLNRL VNRLGEPVIR
QAMMAAMKIM GKQFVLGRTM KEALKNSEDK RKLGYTHSYD MLGEAALTRK DAEKYFNDYA
NAITELGAQS YNESESPRPT ISIKLSALHP RYEVANEDRV LTELYDTVIR LIKLARGLNI
GISIDAEEVD RLELSLKLFQ KLFNSDATKG WGLLGIVVQA YSKRALPVLV WLTRLAKEQG
DEIPVRLVKG AYWDSELKWA QQAGEAAYPL YTRKAGTDVS YLACARYLLS DATRGAIYPQ
FASHNAQTVA AISDMAGDRN HEFQRLHGMG QELYDTILSE AGAKAVRIYA PIGAHKDLLP
YLVRRLLENG ANTSFVHKLV DPKTPIESLV VHPLKTLTGY KTLANNKIVL PSDIFGSDRK
NSKGLNMNII SEAEPFFAAL DKFKSTQWQA GPLVNGQTLT GEHKTVVSPF DTTQTVGQVA
FADKAAIEQA VASADAAFAT WTRTPVEVRA SALQKLADLL EENREELIAL CTREAGKSIQ
DGIDEVREAV DFCRYYAVQA KKLMSKPELL PGPTGELNEL FLQGRGVFVC ISPWNFPLAI
FLGQVSAALA AGNTVVAKPA EQTSIIGYRA VQLAHQAGIP TDVLQYLPGT GATVGNALTA
DERIGGVCFT GSTGTAKLIN RTLANREGAI IPLIAETGGQ NAMVVDSTSQ PEQVVNDVVS
SSFTSAGQRC SALRVLFLQE DIADRVIDVL QGAMDELVIG NPSSVKTDVG PVIDATAKAN
LDAHIDHIKQ VGKLIKQMSL PAGTENGHFV SPTAVEIDSI KVLEKEHFGP ILHVIRYKAS
ELAHVIDEIN STGFGLTLGI HSRNEGHALE VADKVNVGNV YINRNQIGAV VGVQPFGGQG
LSGTGPKAGG PHYLTRFVTE KTRTNNITAI GGNATLLSLG DSDA
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