Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_0850 |
Symbol | |
ID | 4257111 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 967336 |
End bp | 970530 |
Gene Length | 3195 bp |
Protein Length | 1064 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 638121461 |
Product | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
Protein accession | YP_736906 |
Protein GI | 114046356 |
COG category | [C] Energy production and conversion [E] Amino acid transport and metabolism |
COG ID | [COG0506] Proline dehydrogenase [COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.282209 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.198583 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAGCGA TTACTATGTT CAAAGCGAGT GAAGTGCTGG CAGGCCGCTA CGATTCTGCC AATCTCGACG AACTGTTCAA AGCCGTCACC GACAACTATA TTGTCGATGA AGAACAATAC TTGTCAGAGC TAATCAAACT AGTGCCCTCC AGTGATGAAG CCATCGAGCG CGTCACTCGT CGTGCCCACG AACTAGTCAA CAAAGTTCGT CAATTCGATA AGAAAGGTTT AATGGTAGGC ATCGACGCCT TCCTGCAGCA ATACAGCTTA GAAACACAGG AAGGGATTAT CCTGATGTGT TTAGCCGAAG CCCTGCTGCG TATTCCCGAT GCGGCCACCG CCGACGCCTT GATTGAAGAT AAACTCTCAG GCGCGAAATG GGATGAACAC TTAAGCAAGA GCGATTCGGT TCTGGTTAAC GCCTCCACTT GGGGCCTGAT GCTCACTGGC AAAATCGTCA AACTCGATAA AAAAATTGAT GGTACGCCAA GCAACCTGTT AAACCGTTTA GTGAATCGTT TAGGTGAGCC TGTGATCCGC CAAGCCATGA TGGCGGCGAT GAAGATCATG GGTAAGCAGT TCGTACTTGG CCGCACCATG AAAGAAGCGC TCAAGAACAG CGAAGACAAG CGTAAATTAG GTTACACCCA CTCCTACGAT ATGCTGGGTG AAGCCGCACT GACGCGTAAA GACGCCGAAA AATACTTTAA CGATTATGCC AATGCGATTA CCGAATTAGG TGCGCAAAGC TATAACGAAA GCGAATCTCC ACGCCCAACC ATTTCTATCA AGCTGTCGGC ACTGCACCCA CGTTACGAAG TCGCTAACGA AGACCGTGTA CTGACCGAGC TGTATGACAC AGTTATTCGC TTAATTAAGT TAGCCCGTGG CTTAAATATC GGTATTTCTA TCGACGCCGA AGAAGTTGAC CGCCTCGAAC TGTCGCTAAA ACTGTTCCAA AAACTGTTTA ATTCTGACGC CACTAAGGGT TGGGGCTTAC TCGGTATCGT AGTGCAAGCT TACTCTAAGC GCGCCCTGCC GGTACTGGTA TGGTTAACCC GCTTAGCGAA AGAGCAAGGC GACGAAATCC CCGTTCGCTT AGTGAAAGGC GCCTACTGGG ATAGCGAGCT GAAATGGGCA CAACAAGCTG GCGAAGCCGC ATACCCACTC TACACCCGTA AAGCCGGTAC AGACGTGTCT TACTTAGCCT GTGCGCGCTA TCTGTTGTCC GATGCGACAC GCGGCGCAAT TTACCCACAA TTTGCCAGCC ACAACGCGCA AACGGTTGCC GCGATTTCCG ATATGGCGGG CGATCGTAAC CACGAGTTCC AACGTCTACA CGGCATGGGA CAAGAGCTGT ACGACACTAT TCTGTCGGAA GCTGGCGCGA AAGCGGTACG TATCTATGCC CCAATCGGTG CCCATAAAGA TCTGCTGCCC TACTTAGTGC GTCGCCTGCT GGAAAACGGT GCGAACACCT CGTTCGTGCA CAAGCTGGTC GACCCGAAAA CCCCTATCGA GTCTTTAGTG GTTCACCCAC TGAAAACCCT GACAGGCTAC AAAACCCTGG CTAATAACAA AATCGTTTTA CCTAGCGATA TCTTCGGTAG TGATCGCAAA AATTCCAAGG GACTCAACAT GAACATCATT TCAGAAGCAG AGCCATTCTT CGCGGCCTTA GACAAATTCA AATCGACGCA GTGGCAAGCG GGTCCTCTGG TTAACGGTCA AACCTTAACT GGCGAACACA AAACCGTTGT TAGCCCATTC GATACCACTC AAACCGTGGG TCAAGTGGCC TTTGCCGACA AAGCGGCTAT CGAACAAGCT GTCGCCTCTG CCGATGCCGC GTTTGCAACT TGGACTCGTA CTCCCGTTGA AGTGCGCGCC TCAGCCCTGC AAAAGCTGGC GGATCTGTTA GAAGAAAACC GCGAAGAACT GATTGCCCTC TGTACCCGTG AAGCGGGCAA GAGCATTCAA GACGGTATCG ACGAAGTGCG TGAAGCCGTA GACTTCTGCC GCTACTACGC GGTGCAAGCT AAGAAGCTGA TGTCAAAACC TGAACTGCTC CCAGGCCCAA CGGGTGAGTT AAACGAACTC TTCCTCCAAG GTCGCGGTGT GTTCGTGTGT ATCAGCCCAT GGAACTTCCC ATTGGCGATC TTCTTAGGCC AAGTTTCGGC AGCCCTCGCT GCGGGTAACA CTGTAGTGGC TAAACCTGCT GAACAGACTT CTATCATTGG TTACCGCGCA GTGCAGCTTG CACACCAAGC GGGTATTCCT ACAGACGTGC TGCAATATCT ACCAGGTACA GGCGCTACCG TAGGTAACGC ACTGACGGCT GATGAGCGCA TCGGCGGCGT ATGTTTTACC GGTTCAACTG GCACAGCCAA ACTCATCAAC CGCACACTGG CAAACCGTGA AGGCGCAATT ATTCCGTTAA TCGCCGAAAC CGGTGGTCAA AACGCTATGG TGGTAGACTC TACTTCTCAG CCAGAACAAG TGGTTAACGA TGTAGTATCT TCATCCTTCA CCAGTGCGGG TCAACGCTGC TCGGCGCTGC GTGTACTCTT CCTACAGGAA GATATTGCAG ACCGCGTTAT CGATGTACTC CAAGGTGCAA TGGATGAGTT AGTGATTGGC AACCCAAGTT CAGTGAAAAC CGACGTAGGC CCAGTTATCG ATGCGACCGC GAAGGCTAAC CTTGACGCCC ATATCGACCA CATCAAGCAA GTTGGTAAGT TGATCAAGCA AATGTCTCTG CCAGCGGGTA CTGAGAATGG CCACTTTGTG TCGCCAACTG CCGTTGAAAT CGATTCAATC AAAGTGCTTG AAAAAGAACA CTTTGGCCCA ATCCTGCACG TGATCCGTTA CAAGGCATCT GAACTTGCCC ATGTGATCGA TGAAATCAAC AGCACAGGCT TTGGCTTAAC CTTAGGTATC CACAGCCGTA ACGAAGGCCA TGCCCTCGAA GTAGCTGACA AGGTTAACGT AGGTAACGTG TACATCAACC GTAACCAAAT CGGCGCAGTC GTTGGCGTAC AACCTTTCGG CGGTCAAGGT CTGTCTGGCA CAGGTCCAAA AGCAGGTGGT CCACACTACT TAACTCGCTT CGTGACTGAA AAGACTCGCA CTAATAACAT CACCGCTATC GGTGGTAACG CGACCCTGTT GTCACTGGGT GATAGCGACG CCTAA
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Protein sequence | MEAITMFKAS EVLAGRYDSA NLDELFKAVT DNYIVDEEQY LSELIKLVPS SDEAIERVTR RAHELVNKVR QFDKKGLMVG IDAFLQQYSL ETQEGIILMC LAEALLRIPD AATADALIED KLSGAKWDEH LSKSDSVLVN ASTWGLMLTG KIVKLDKKID GTPSNLLNRL VNRLGEPVIR QAMMAAMKIM GKQFVLGRTM KEALKNSEDK RKLGYTHSYD MLGEAALTRK DAEKYFNDYA NAITELGAQS YNESESPRPT ISIKLSALHP RYEVANEDRV LTELYDTVIR LIKLARGLNI GISIDAEEVD RLELSLKLFQ KLFNSDATKG WGLLGIVVQA YSKRALPVLV WLTRLAKEQG DEIPVRLVKG AYWDSELKWA QQAGEAAYPL YTRKAGTDVS YLACARYLLS DATRGAIYPQ FASHNAQTVA AISDMAGDRN HEFQRLHGMG QELYDTILSE AGAKAVRIYA PIGAHKDLLP YLVRRLLENG ANTSFVHKLV DPKTPIESLV VHPLKTLTGY KTLANNKIVL PSDIFGSDRK NSKGLNMNII SEAEPFFAAL DKFKSTQWQA GPLVNGQTLT GEHKTVVSPF DTTQTVGQVA FADKAAIEQA VASADAAFAT WTRTPVEVRA SALQKLADLL EENREELIAL CTREAGKSIQ DGIDEVREAV DFCRYYAVQA KKLMSKPELL PGPTGELNEL FLQGRGVFVC ISPWNFPLAI FLGQVSAALA AGNTVVAKPA EQTSIIGYRA VQLAHQAGIP TDVLQYLPGT GATVGNALTA DERIGGVCFT GSTGTAKLIN RTLANREGAI IPLIAETGGQ NAMVVDSTSQ PEQVVNDVVS SSFTSAGQRC SALRVLFLQE DIADRVIDVL QGAMDELVIG NPSSVKTDVG PVIDATAKAN LDAHIDHIKQ VGKLIKQMSL PAGTENGHFV SPTAVEIDSI KVLEKEHFGP ILHVIRYKAS ELAHVIDEIN STGFGLTLGI HSRNEGHALE VADKVNVGNV YINRNQIGAV VGVQPFGGQG LSGTGPKAGG PHYLTRFVTE KTRTNNITAI GGNATLLSLG DSDA
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