Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_0794 |
Symbol | ipk |
ID | 4256395 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 906586 |
End bp | 907440 |
Gene Length | 855 bp |
Protein Length | 284 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 638121406 |
Product | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase |
Protein accession | YP_736851 |
Protein GI | 114046301 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1947] 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase |
TIGRFAM ID | [TIGR00154] 4-diphosphocytidyl-2C-methyl-D-erythritol kinase |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0030636 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.782101 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGAATG AGATTTCACG CAATTGGCCC GCGCCCGCAA AATTAAATCT GTTTTTGCAT ATCAACGGGC GCCGCGCCGA CGGTTACCAT GAGTTGCAAA CCCTGTTTCA ATTTATCGAT TGTTGCGATC TGCTCGACTT TAGGGTGACG CAGACGCCAG AGCTGATATT GCACTCGGAC ATGTCGGCCG TTGTCGCGGA TAGCGATAAC TTAATTCTGC GAGCCGCAAA ATCATTACAG CAAGCAACAG GCTATCCCGG CGGCGCCGAA ATCTGGCTTG AAAAACGTTT ACCTATGGGC GGCGGTTTAG GCGGCGGTTC CTCCGATGCG GCCACTACAC TCGTGGCGTT AAATCAGTTG TGGAACACCC AATTATCTAA CGATGAATTA GCCACAATTG GTTTAAAACT CGGTGCCGAT ATCCCTGTTT TTATTCGCGG TTTCGCGGCA TTTGCCGAAG GCGTTGGCGA ACGTTTACAG GCGGTGACGC CCACTGAATT TTGGTATTTA GTGATAGCGC CCGATGCCCA TGTTTCCACC GCAGCTGTGT TCCAAGATCC TTTGCTACCC CGCAATACAC CTAAGCTTGG CATCGACACG TTAATGAGCC AACCTTGGGC AAATGATTGC CAAGATCTGG TCGTTTCCAA ATACCCTCAA GTTGCCAAGG CCTTAGGCTG GCTGTTAGAA TATGCGCCGT CGAGAATGAC CGGAACGGGC GCATGCGTGT TTGGGGAGTT TTCTTCGCAG CAGCAAGCTC TCGCAGCCTT GGCGAAATTA CCGTCTGATA TGCAAGGATT TGTTGCAAAA GGGATGAATA TTTCGCCGCT CATAGTGCGA CTCAATCATC CATAA
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Protein sequence | MSNEISRNWP APAKLNLFLH INGRRADGYH ELQTLFQFID CCDLLDFRVT QTPELILHSD MSAVVADSDN LILRAAKSLQ QATGYPGGAE IWLEKRLPMG GGLGGGSSDA ATTLVALNQL WNTQLSNDEL ATIGLKLGAD IPVFIRGFAA FAEGVGERLQ AVTPTEFWYL VIAPDAHVST AAVFQDPLLP RNTPKLGIDT LMSQPWANDC QDLVVSKYPQ VAKALGWLLE YAPSRMTGTG ACVFGEFSSQ QQALAALAKL PSDMQGFVAK GMNISPLIVR LNHP
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