| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0791 |
|---|
| Symbol | |
|---|
| ID | 4257228 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 902544 |
|---|
| End bp | 903077 |
|---|
| Gene Length | 534 bp |
|---|
| Protein Length | 177 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638121403 |
|---|
| Product | ECF subfamily RNA polymerase sigma-24 factor |
|---|
| Protein accession | YP_736848 |
|---|
| Protein GI | 114046298 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.105349 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.745937 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGGCAG GGAGACTCCC ACTCAACGAT GCGATGTCAG AATTTGACCT CATCACCTTG
GCCAGCCAAG GCAATAGAGC CGCATTTAAG CAACTGTATT TAAGCCATCA TCCAAGGGTA
TATGCGTTAT CACTGCGGTT AAGTGGTCAA GCCTCGCAGG CGGAAGAAAT CACCCAAGAG
TGCTTTATTC TGGTCTGGCA GAAGTTGCCA CAATTTAGGG GAGAGAGTCA GTTTTCCACT
TGGTTACACA GCATCTGTGT GAATCAAGCG CTGAGCTTTA TTCGTAAGCA GAAGTCGTTT
TGGGCGCGTT TTATCCCGAT AGAGAGTGAC GATGAACACC CAAGCGCAGA TGAACATTAT
CAAGGGTTAG ACAAGTTGAT CCTCAAACTG CCAGAGCGGG CGCGTATCGT GTTTGTGCTC
TGCGCCATTG AAGGTTATCA ACATGAAGAA ATTGCGCAAT TACTTGGCAT TGCCGTGGGA
ACCAGTAAGA CCCAGTACCA CAGAGCCAAG CGATTACTAC AGGAGATGCT GTAA
|
|---|
| Protein sequence | MTAGRLPLND AMSEFDLITL ASQGNRAAFK QLYLSHHPRV YALSLRLSGQ ASQAEEITQE
CFILVWQKLP QFRGESQFST WLHSICVNQA LSFIRKQKSF WARFIPIESD DEHPSADEHY
QGLDKLILKL PERARIVFVL CAIEGYQHEE IAQLLGIAVG TSKTQYHRAK RLLQEML
|
|---|
| |