| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0788 |
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| Symbol | |
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| ID | 4257225 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 900224 |
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| End bp | 900931 |
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| Gene Length | 708 bp |
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| Protein Length | 235 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638121400 |
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| Product | ribosomal small subunit pseudouridine synthase A |
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| Protein accession | YP_736845 |
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| Protein GI | 114046295 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0198055 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.495021 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAAGTTGA GTCGTCCAGT GCGTTTAGAT AAATTTATCT GTGAAAGTAC CTCGCTTACC
CGTTCTTTAG CGAAAAAAGC CTTACACCGT GGTGAGATTA CCTGTGACGG TGTTGTGGTC
AAAGACTCTG GCTTTAAAGT GCTTGAGGGG ATGCAAGTAT GCCTCGACGG TGAGCCTATC
TCCCTCGTCG GAGAGCGTTA CCTGATGCTT AATAAGCCCG TGGATACGAT TTGCTCGACT
ATCGATGAAG CCTATCCATC GGTATTGAGT CTGCTGGATA TCGAAAAGCC AGAAACTTTA
CACATTGCTG GCCGTTTAGA TGCCGATACT ACTGGCCTTG TGTTGATCAC CAGCGATGGC
CAATGGTCGC ATCGGATTAC CTCGCCGAAA AAAGACTGTG GCAAGCGTTA CTTAGTAGCA
TTAGCAGATC CAGTTGATGA GAGTTTGGTA GGCATATTTG CCGCCGGAGT GGAACTGAGA
AATGAAGATG GCCTGACAAA ACCCGCAGTG CTTGAAATCA TTGAGCCACA GTTGGTGCGT
TTAACCATTA CCGAAGGTAA GTATCATCAA GTTAAGCGGA TGTTTGCTGC CGTGGGCAAT
CATGTGGTTG GCTTACACCG TGAAAGCATT GGCAGAATTG AATTAGACTC AGATCTTGCC
CCAGGTGAAT GGCGCTATCT GACGAGTGAG GAAATCGCCT CGATTTAA
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| Protein sequence | MKLSRPVRLD KFICESTSLT RSLAKKALHR GEITCDGVVV KDSGFKVLEG MQVCLDGEPI
SLVGERYLML NKPVDTICST IDEAYPSVLS LLDIEKPETL HIAGRLDADT TGLVLITSDG
QWSHRITSPK KDCGKRYLVA LADPVDESLV GIFAAGVELR NEDGLTKPAV LEIIEPQLVR
LTITEGKYHQ VKRMFAAVGN HVVGLHRESI GRIELDSDLA PGEWRYLTSE EIASI
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