Gene Shewmr7_0758 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_0758 
Symbol 
ID4255831 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp862768 
End bp864654 
Gene Length1887 bp 
Protein Length628 aa 
Translation table11 
GC content50% 
IMG OID638121369 
ProductDNA topoisomerase IV subunit B 
Protein accessionYP_736815 
Protein GI114046265 
COG category[L] Replication, recombination and repair 
COG ID[COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 
TIGRFAM ID[TIGR01055] DNA topoisomerase IV, B subunit, proteobacterial 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.220488 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00186834 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACGAATC AATACACCTC TGACGCCATT GAAGTTCTTA ACGGACTCGA CCCAGTTAAA 
CGCCGTCCAG GTATGTATAC CGATACCACC CGACCTAACC ACTTAGGCCA AGAGGTCATA
GATAACAGTG TGGACGAGGC TTTAGCGGGC CACGCCACTA AAATTGAAGT TGTGCTCCAT
ACCGATAACT CTCTGGAAGT CACCGACGAT GGTCGGGGGA TGCCGGTAGA TATTCACCCT
GAAGAAGGCA TTCCCGGGGT CGAGCTGATC CTCACTAAAC TGCATGCGGG CGGTAAATTT
TCGAATAAGA ATTACCAATT CTCTGGCGGT CTGCACGGTG TGGGGATTTC GGTCGTTAAC
GCCCTGTCTC GTCGCGTCGA AGTGACGGTA CGCCGTGATG GCCAAGTGTA TGATATCGCT
TTTGAAAATG GCTTTAAGGT TGAAGAGTTA AAAGTCACTG GTACTTGTGG TCGTCGCAAT
ACCGGTACTC GAGTGCATTT CTGGCCCGAC GCCAGCTATT TTGATTCGGC CAATTTCTCC
AACTCCAAAC TCATCTATTT GCTGCGCGCC AAGGCAGTAT TGTGTCCGGG CCTGAGGATC
AAATTTACCA ATAAACACAC CAACGAAGTC CATGAATGGT ACTACGAGAG TGGTTTAACG
GATTATCTCA AGGCGGCGGT TGGCGATAAC CTCATGCTGC CAGAAGAGCC TTTTATCGGC
AGCTTTAAAG GACAAATTGA AGCCGCGGAT TGGGCCATTA CTTGGTTGCC CGAAGGTGGC
GATGCGATTA ACGAAAGCTA TGTTAACTTG ATCCCAACGC CATTGGGTGG AACCCACGTA
AACGGTTTCC GCCAAGGTTT GCTGGAGTCG ATGCGCGAGT TTTGCGAGTT TCGCAATCTG
ATCCCCCGCG GTATCAAGTT GTCGCCTGAG GATATTTGGG ATCGCGCCGC CTTCATTCTC
TCGGTGAAGA TGCAAGATCC GCAGTTTGCA GGGCAAACTA AAGAGAAACT TTCGAGCCGT
CAAAGCTCGG CCTTTGTCTC TGGCATTGTG CGCGATGCAT TCTCACTGTG GCTCAACTCG
AATACCGAAT TGGCCGAATC ATTGGCTGAG ATGTGTATCA ACAATGCTCA AAAGCGCTTA
AAAGCCGCTA AAAAAGTGGC CCGTAAAAAA GTGACTTCTG GCCCAGCATT ACCGGGTAAA
TTGACCGACT GTAGCGGCCA AGATCCTATG CGCGGTGAGC TCTTCTTAGT GGAAGGGGAT
TCTGCGGGCG GCAGTGCCAA GCAGGCGCGT GACCGTGAGT TTCAAGCCAT TATGCCGCTG
CGCGGTAAAA TCCTAAACAC TTGGGAGGTG GATGCCTCGC AGGTGTTGGC CTCGCAGGAA
GTGCATGATA TCTCGGTGGC GATTGGTTGC GATCCCGACA GCAACGATAT CTCCGAGTTA
AGATATGGCA AGATTTGTAT TCTCGCCGAC GCGGACTCCG ACGGGCTACA TATTGCAACT
TTACTCTGTG CCCTGTTTCT GAAACATTAC CGTGTGCTGG TCGAACAGGG CCATGTCTAT
ATCGCTATGC CACCGTTGTT CCGTATCGAT ATAGGTAAGG ACGTTTACTA CGCCTTAGAT
GAGGCTGAAA AAGAAGGTAT TCTCGACCGT ATTAGCGCCG AGAATAAAAA GGGTAAGGTT
CAAGTGACAC GCTTTAAAGG TCTGGGTGAA ATGAACCCAC TGCAATTGCG TGAAACGACC
ATGGATCCAA ACACTCGCCG TTTAGTGCAG TTAACCATTG ATGATGCAGA AGAAACCAAT
TCTCTGATGG ATATGTTGCT CGCTAAGAAG CGTTCGCCCG ATCGTAAAAA CTGGCTCGAA
GATAAGGGTG ACATGGCGGT ACTTTAA
 
Protein sequence
MTNQYTSDAI EVLNGLDPVK RRPGMYTDTT RPNHLGQEVI DNSVDEALAG HATKIEVVLH 
TDNSLEVTDD GRGMPVDIHP EEGIPGVELI LTKLHAGGKF SNKNYQFSGG LHGVGISVVN
ALSRRVEVTV RRDGQVYDIA FENGFKVEEL KVTGTCGRRN TGTRVHFWPD ASYFDSANFS
NSKLIYLLRA KAVLCPGLRI KFTNKHTNEV HEWYYESGLT DYLKAAVGDN LMLPEEPFIG
SFKGQIEAAD WAITWLPEGG DAINESYVNL IPTPLGGTHV NGFRQGLLES MREFCEFRNL
IPRGIKLSPE DIWDRAAFIL SVKMQDPQFA GQTKEKLSSR QSSAFVSGIV RDAFSLWLNS
NTELAESLAE MCINNAQKRL KAAKKVARKK VTSGPALPGK LTDCSGQDPM RGELFLVEGD
SAGGSAKQAR DREFQAIMPL RGKILNTWEV DASQVLASQE VHDISVAIGC DPDSNDISEL
RYGKICILAD ADSDGLHIAT LLCALFLKHY RVLVEQGHVY IAMPPLFRID IGKDVYYALD
EAEKEGILDR ISAENKKGKV QVTRFKGLGE MNPLQLRETT MDPNTRRLVQ LTIDDAEETN
SLMDMLLAKK RSPDRKNWLE DKGDMAVL